| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1406 |
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| Symbol | cheD3 |
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| ID | 1223718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1769084 |
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| End bp | 1770910 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637241269 |
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| Product | methyl-accepting chemotaxis I |
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| Protein accession | NP_522965 |
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| Protein GI | 17549625 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.13211 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCGCG GAATGACCAT CCGGCTCCGA CTGGCGCTGA TGATGGCGGG TGTTGCCGTG
CTCGCCGTTG TCATCGGGAC GACCGGTCTG CTCGGCATGC GCCACGCCAA CACGCGTGTG
CAGGCGACCT ATGAAATGCA ATTGGCGGGC GCCGTGGCGC TGGCCGAGTC CGATGCGAGC
ATGCTGAGCT TTCGCCTCGT GCTCGACCGG GCCGCCATGG ATATCAAGGC GCCGAGCCTG
GGCAAGACCC TCGAGCGCGC CCGGATGTTT CTCGCCAAGT CCGACGCATC CTGGAAGCGC
TACCGCGCCC TGCCGTCCAC GCCCGACGAA CGCAAGCTGG CCGACGAGGC CGACGCGCTG
CGCACGGTGT TCCTGCGCGA CGGCGCCCAG GCGCTGATGC AGGCCATCCA GGCCGGCGAT
GCCGAGCGCA CCAGCCAGAC GGTGATGGAG GCGATGCCGG CCCTGTATCG GCCGCTGGGC
GACAAGGTGA CAGCGCTGTC GCGCATGCAG ATGGAGATTG CCCGCGCCAG CTACGAAGCC
GGCCAGCGCG AGCACGATGG CCTGAGCGCC CTGACCGCCG CGCTGCTTCT GGTCGGCATC
GTGGGGGGCG GGCTGCTGAC CTGGTCGCTG CGGCGCTCGA TCACGGTGCC GCTGAACCGC
GCCATCGAGC AGGCCGAACA CATCACCCGG GGCGACCTGA CGCACGCGAT CCACGTCGAT
CGCGCCGATG AGACCGGTCG CATGCTGCTG GCCCTGCAGC GGATGCAGGA GAGCCTGCAG
GGCATGGTCG GCCAGGTGCG GACCGGATCG GATGCGATCG CCAGCGCCAC GCAGCAGATT
GCGGCGGGCA ATGCCGACCT GTCGCAGCGC ACCGAACAGC AGGCCTCGTC GCTCGAGGAA
ACGGCGTCGA GCATGGAGCA GCTGACCGGC ATGGTGAAGC AGAACGCCGA CAGCGCGCGG
CAGGCGAGCA CGCTGGCGGT CAATGCCTCG GACATCGCGG TCAAGGGCGG CGAAGTGGTC
GGTCGCGTGG TTGAGACCAT GGCCGGCATC CACGACAGCA GCAGGAAGAT CGCCGACATC
ATCGGCGTGA TCGAAGGGAT TGCATTCCAG ACCAACATCC TGGCGCTGAA CGCGGCGGTG
GAAGCGGCCC GGGCCGGCGA GCAGGGCCGG GGGTTTGCGG TGGTGGCGGG CGAGGTGCGC
AGCCTGGCGC AGCGCTCGGC GGGGGCGGCC AAGGAGATCA AGACGCTGAT CTCGGACTCG
GTCGGCCGGG TCGAGAGCGG CACCACGCTG GTGGCCGAGG CCGGCACCGT CATCGATGAA
GTGGTCGTGG CCGTGAAGCG CGTGACCGGC ATCATGGGCG AGATCTCCGC CGCGTCGGAC
GCACAGAGCG AGGGCATCGC CCAGGTCAAC CAGGCCGTGA CCCAGATGGA CGAGGCCACG
CAGCAGAACG CGGCGCTGGT GGAGCAGGCG GCTGCGGCGG CCATGTCGCT GCAGGAGCAG
GCCGATGGCC TGCGCGGTAC GGTGGCGGCT TTCCGCACCC GCGCGGATGC GCCGGCGCAG
ACCGTGGCGC GCCCCGCGCG GCCCGCCGCC GCCCCGGTGA AGGCGCCGGC GCGGGCTACC
GCACTCGCGC GGCGGCCGGC ACCGAAGGCC GCCGTGGCGC GGCCGCCGGC CACAGCAGGC
GAGGCCACGC CGTCGGCCAC AGCGAGTTCA AACGAACAAC AGCGTACGCG TCAGGCAGCG
GCCAAGGCCG TTGTACCGGC GCCGAAGAAG CAAGCGCCCA AGCTCGTCGC GGCAGGAGGC
GACGAAAGCG ACTGGGAAAC CTTTTAA
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| Protein sequence | MFRGMTIRLR LALMMAGVAV LAVVIGTTGL LGMRHANTRV QATYEMQLAG AVALAESDAS
MLSFRLVLDR AAMDIKAPSL GKTLERARMF LAKSDASWKR YRALPSTPDE RKLADEADAL
RTVFLRDGAQ ALMQAIQAGD AERTSQTVME AMPALYRPLG DKVTALSRMQ MEIARASYEA
GQREHDGLSA LTAALLLVGI VGGGLLTWSL RRSITVPLNR AIEQAEHITR GDLTHAIHVD
RADETGRMLL ALQRMQESLQ GMVGQVRTGS DAIASATQQI AAGNADLSQR TEQQASSLEE
TASSMEQLTG MVKQNADSAR QASTLAVNAS DIAVKGGEVV GRVVETMAGI HDSSRKIADI
IGVIEGIAFQ TNILALNAAV EAARAGEQGR GFAVVAGEVR SLAQRSAGAA KEIKTLISDS
VGRVESGTTL VAEAGTVIDE VVVAVKRVTG IMGEISAASD AQSEGIAQVN QAVTQMDEAT
QQNAALVEQA AAAAMSLQEQ ADGLRGTVAA FRTRADAPAQ TVARPARPAA APVKAPARAT
ALARRPAPKA AVARPPATAG EATPSATASS NEQQRTRQAA AKAVVPAPKK QAPKLVAAGG
DESDWETF
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