More than 300 homologs were found in PanDaTox collection
for query gene Jden_1322 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  100 
 
 
414 aa  848    Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  76.12 
 
 
420 aa  612  9.999999999999999e-175  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  70.54 
 
 
413 aa  568  1e-161  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  71.24 
 
 
405 aa  542  1e-153  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  66.49 
 
 
407 aa  538  9.999999999999999e-153  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  70.31 
 
 
405 aa  539  9.999999999999999e-153  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  65.65 
 
 
428 aa  525  1e-148  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  65.9 
 
 
420 aa  526  1e-148  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  64.3 
 
 
403 aa  518  1e-146  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  65.26 
 
 
392 aa  505  9.999999999999999e-143  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  66.75 
 
 
395 aa  505  9.999999999999999e-143  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  64.16 
 
 
397 aa  499  1e-140  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  64.84 
 
 
378 aa  483  1e-135  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  61.67 
 
 
423 aa  479  1e-134  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  62.47 
 
 
388 aa  475  1e-133  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  61.27 
 
 
400 aa  476  1e-133  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  61.84 
 
 
394 aa  469  1.0000000000000001e-131  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  63.19 
 
 
397 aa  470  1.0000000000000001e-131  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  61.78 
 
 
372 aa  468  9.999999999999999e-131  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  62.47 
 
 
370 aa  467  9.999999999999999e-131  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  57.39 
 
 
402 aa  462  1e-129  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  59.42 
 
 
378 aa  451  1.0000000000000001e-126  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  58.51 
 
 
397 aa  454  1.0000000000000001e-126  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  57.31 
 
 
421 aa  449  1e-125  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  59.38 
 
 
386 aa  446  1.0000000000000001e-124  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  58.78 
 
 
377 aa  443  1e-123  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  59.16 
 
 
386 aa  437  1e-121  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  56.46 
 
 
412 aa  437  1e-121  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  59.32 
 
 
416 aa  434  1e-120  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  59.42 
 
 
387 aa  432  1e-120  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  59.69 
 
 
387 aa  434  1e-120  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  59.69 
 
 
387 aa  434  1e-120  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  58.27 
 
 
378 aa  433  1e-120  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  57.14 
 
 
404 aa  427  1e-118  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  58.01 
 
 
376 aa  423  1e-117  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  56.4 
 
 
378 aa  424  1e-117  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  55.18 
 
 
387 aa  405  1.0000000000000001e-112  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  55.91 
 
 
376 aa  408  1.0000000000000001e-112  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  50.38 
 
 
380 aa  359  4e-98  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  53.03 
 
 
386 aa  359  6e-98  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  53.44 
 
 
386 aa  359  6e-98  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  49.12 
 
 
374 aa  357  1.9999999999999998e-97  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  46.89 
 
 
393 aa  355  8.999999999999999e-97  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  49.61 
 
 
379 aa  354  1e-96  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  47.24 
 
 
356 aa  352  8e-96  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  49.34 
 
 
358 aa  351  1e-95  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  49.48 
 
 
372 aa  350  3e-95  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  50 
 
 
376 aa  349  4e-95  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  47.68 
 
 
393 aa  350  4e-95  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_007577  PMT9312_0848  carbamoyl phosphate synthase small subunit  46.65 
 
 
379 aa  349  6e-95  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  47.36 
 
 
391 aa  349  6e-95  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  48.14 
 
 
392 aa  348  1e-94  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  48.14 
 
 
392 aa  348  1e-94  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  45.32 
 
 
399 aa  346  3e-94  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  45.34 
 
 
398 aa  345  6e-94  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  46.53 
 
 
390 aa  344  2e-93  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  49.22 
 
 
391 aa  344  2e-93  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  47.53 
 
 
384 aa  343  2.9999999999999997e-93  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  48.74 
 
 
388 aa  343  4e-93  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  45.88 
 
 
379 aa  342  5.999999999999999e-93  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_09071  carbamoyl phosphate synthase small subunit  46.13 
 
 
379 aa  342  8e-93  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  45.48 
 
 
399 aa  341  1e-92  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_007516  Syncc9605_1152  carbamoyl phosphate synthase small subunit  48.22 
 
 
386 aa  340  2e-92  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  48.05 
 
 
389 aa  340  2e-92  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_008816  A9601_09091  carbamoyl phosphate synthase small subunit  45.36 
 
 
379 aa  338  9.999999999999999e-92  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.347132  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  45.22 
 
 
381 aa  338  9.999999999999999e-92  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  48.14 
 
 
359 aa  337  1.9999999999999998e-91  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  46.25 
 
 
385 aa  337  1.9999999999999998e-91  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  46.56 
 
 
378 aa  335  5.999999999999999e-91  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  46.55 
 
 
378 aa  335  5.999999999999999e-91  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  48.32 
 
 
383 aa  336  5.999999999999999e-91  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  46.35 
 
 
380 aa  335  7e-91  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  46.35 
 
 
380 aa  335  7e-91  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  46.55 
 
 
378 aa  335  7e-91  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  47.3 
 
 
379 aa  335  7.999999999999999e-91  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  47.27 
 
 
378 aa  334  1e-90  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  47.18 
 
 
385 aa  334  1e-90  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  45.95 
 
 
397 aa  335  1e-90  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  48.55 
 
 
359 aa  335  1e-90  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  48.7 
 
 
372 aa  334  2e-90  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  45.41 
 
 
365 aa  334  2e-90  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  46.75 
 
 
381 aa  333  2e-90  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  48.45 
 
 
373 aa  334  2e-90  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  46.67 
 
 
378 aa  333  4e-90  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1307  carbamoyl phosphate synthase small subunit  46.4 
 
 
398 aa  333  4e-90  Synechococcus sp. CC9902  Bacteria  normal  0.786161  n/a   
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  47.53 
 
 
378 aa  333  5e-90  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  46.75 
 
 
381 aa  333  5e-90  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  48.2 
 
 
373 aa  332  5e-90  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  44.25 
 
 
384 aa  332  6e-90  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  49.09 
 
 
361 aa  332  6e-90  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  46.49 
 
 
381 aa  332  7.000000000000001e-90  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  47.83 
 
 
386 aa  332  9e-90  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  47.38 
 
 
378 aa  332  1e-89  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  46.49 
 
 
381 aa  332  1e-89  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_008820  P9303_15771  carbamoyl phosphate synthase small subunit  48.2 
 
 
379 aa  332  1e-89  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007335  PMN2A_0259  carbamoyl phosphate synthase small subunit  44.25 
 
 
384 aa  332  1e-89  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  46.49 
 
 
381 aa  332  1e-89  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  47.94 
 
 
373 aa  331  1e-89  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  44.85 
 
 
380 aa  331  1e-89  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  45.94 
 
 
381 aa  331  1e-89  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
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