| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_15580 |
|---|
| Symbol | |
|---|
| ID | 8386891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1598823 |
|---|
| End bp | 1599959 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644975636 |
|---|
| Product | carbamoyl-phosphate synthase small subunit |
|---|
| Protein accession | YP_003133420 |
|---|
| Protein GI | 257055588 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGGA TGCGCACAGC CGCCGTGCTC GTGCTTGAGG ACGGCCGGAT CTTCCGGGGG
ACGGCGTACG GCGCCCGTGG GCGCGCCCTG GGGGAGGCGG TCTTCTCCAC CGGGATGACC
GGCTACCAGG AGACGCTGAC CGACCCGTCG TATCACCGGC AGATCGTGGT GCAGACGGCG
CCGCACATCG GCAACACCGG TTGGAACTCC GAGGACGACG AGTCCGGACG GGTCTGGGCG
GCCGGGTACG TGGTGCGGGA CCCGGCGCGG ACGCCGTCTC ACTGGCGGTC GACGCGCACG
TTGGAGGACG TGCTCGTCGA GCAGGGCGTG GTCGGTATCG CCGAGGTCGA CACGCGCGCG
CTCACCCGGT ATCTCCGTGA GCACGGCGCC ATGCGCGCCG GCATCTTCTC CGGCGACGCC
CTGAGCGCGG AGGACGACCT GGTGGCCCAG GTCCAGGCGA GTCCGAGGAT GCAGGGCGCC
GATCTCGCGA AGGAGGTCAC CACGGCCACG CCGTACGTGG TGCCGGCGGA GGGACGGACC
CGCTTCCGAG TGGCGGCGCT GGATCTCGGC ATCAAGGCGA ACACCCCATG TCGGATGGCG
GCGCGGGGTA TCGAGGTGCA CGTCCTGCCC GCAAGCAGCG GACTCGACGA CGTCCTCGCC
GTCGAGCCGC ACGGGGTGTT CCTGTCCAAC GGTCCCGGGG ACCCCGAGAC CCAGCGGGGC
GCGATCGAGC TCACTCGCCG GGTGTTGGAG CGGGAGCTGC CGCTGTTTGG CATCTGCTTC
GGCAACCAGA TCCTCGGTCG GGCGTTGGGG CTGAACACCT ACAAGATGCG TTTCGGACAC
CGGGGTCTCA ACGTCCCGGT CATCGACGTC GCCACCGGCA AGGTGGCCAT CACCGCACAG
AACCACGGAT TCGCTCTCGA AGGCGAGCCG GGACAGCGTT TCGATTCGCC GTTCGGCAAG
GCGCGGGTCA GTCATTACTG CGCCAACGAC GGCACGGTGG AGGGTCTGCG CTGCGAGGAG
GTTCCGGCGT TCTCGGTGCA GTACCACCCG GAGGCCGCCG CGGGCCCGCA TGACGCGGGA
TCGCTGTTCG ACGAGTTCGT CACCCTGATG GAGGCCCGCC ATGCCCAAAC GCAGTGA
|
|---|
| Protein sequence | MTGMRTAAVL VLEDGRIFRG TAYGARGRAL GEAVFSTGMT GYQETLTDPS YHRQIVVQTA
PHIGNTGWNS EDDESGRVWA AGYVVRDPAR TPSHWRSTRT LEDVLVEQGV VGIAEVDTRA
LTRYLREHGA MRAGIFSGDA LSAEDDLVAQ VQASPRMQGA DLAKEVTTAT PYVVPAEGRT
RFRVAALDLG IKANTPCRMA ARGIEVHVLP ASSGLDDVLA VEPHGVFLSN GPGDPETQRG
AIELTRRVLE RELPLFGICF GNQILGRALG LNTYKMRFGH RGLNVPVIDV ATGKVAITAQ
NHGFALEGEP GQRFDSPFGK ARVSHYCAND GTVEGLRCEE VPAFSVQYHP EAAAGPHDAG
SLFDEFVTLM EARHAQTQ
|
|---|
| |