More than 300 homologs were found in PanDaTox collection
for query gene Svir_15580 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  100 
 
 
378 aa  772    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  73.71 
 
 
370 aa  558  1e-158  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  67.39 
 
 
378 aa  514  1e-144  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  66.49 
 
 
376 aa  492  9.999999999999999e-139  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  67.12 
 
 
400 aa  492  9.999999999999999e-139  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  64.44 
 
 
387 aa  484  1e-136  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  66.21 
 
 
395 aa  488  1e-136  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  64.69 
 
 
428 aa  479  1e-134  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  66.21 
 
 
372 aa  481  1e-134  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  64.44 
 
 
392 aa  479  1e-134  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  63.29 
 
 
378 aa  479  1e-134  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  65.85 
 
 
376 aa  479  1e-134  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  63.44 
 
 
397 aa  475  1e-133  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  62.24 
 
 
420 aa  471  1e-132  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  64.04 
 
 
386 aa  472  1e-132  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  65.57 
 
 
387 aa  474  1e-132  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  65.57 
 
 
387 aa  474  1e-132  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  61.3 
 
 
420 aa  471  1e-132  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  65.57 
 
 
387 aa  474  1e-132  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  64.75 
 
 
388 aa  464  9.999999999999999e-131  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  62.7 
 
 
386 aa  463  1e-129  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  60 
 
 
412 aa  461  1e-129  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  62.97 
 
 
397 aa  455  1e-127  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  59.42 
 
 
414 aa  451  1.0000000000000001e-126  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  62.6 
 
 
423 aa  452  1.0000000000000001e-126  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  63.61 
 
 
405 aa  454  1.0000000000000001e-126  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  62.53 
 
 
394 aa  451  1.0000000000000001e-126  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  62.1 
 
 
377 aa  450  1e-125  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  59.27 
 
 
404 aa  447  1.0000000000000001e-124  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  62.47 
 
 
378 aa  446  1.0000000000000001e-124  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  61.75 
 
 
397 aa  439  9.999999999999999e-123  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  61.4 
 
 
405 aa  435  1e-121  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  58.07 
 
 
413 aa  432  1e-120  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  55.84 
 
 
407 aa  432  1e-120  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  58.13 
 
 
402 aa  433  1e-120  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  59.57 
 
 
416 aa  431  1e-119  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  57.95 
 
 
421 aa  427  1e-118  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  54.07 
 
 
403 aa  403  1e-111  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  49.35 
 
 
383 aa  351  1e-95  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  50 
 
 
393 aa  349  5e-95  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  49.87 
 
 
387 aa  344  1e-93  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  49.35 
 
 
376 aa  343  4e-93  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  49.21 
 
 
381 aa  343  4e-93  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  47.41 
 
 
381 aa  340  2.9999999999999998e-92  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  49.34 
 
 
381 aa  339  5e-92  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  49.08 
 
 
381 aa  338  8e-92  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.27 
 
 
359 aa  338  8e-92  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  49.08 
 
 
381 aa  338  8e-92  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  49.08 
 
 
381 aa  338  8e-92  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  49.08 
 
 
381 aa  338  8e-92  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  49.08 
 
 
381 aa  338  9e-92  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  49.08 
 
 
391 aa  337  9.999999999999999e-92  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  48.82 
 
 
381 aa  337  1.9999999999999998e-91  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  48.35 
 
 
358 aa  336  2.9999999999999997e-91  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  48.52 
 
 
369 aa  336  3.9999999999999995e-91  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  49.87 
 
 
391 aa  336  3.9999999999999995e-91  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  50.52 
 
 
386 aa  335  7e-91  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  50.79 
 
 
386 aa  335  7.999999999999999e-91  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  46.53 
 
 
385 aa  334  1e-90  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  47.57 
 
 
384 aa  334  1e-90  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  47.64 
 
 
379 aa  335  1e-90  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  48.03 
 
 
381 aa  334  2e-90  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  48.54 
 
 
379 aa  332  5e-90  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  48.15 
 
 
380 aa  332  5e-90  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  47.38 
 
 
383 aa  332  6e-90  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_09091  carbamoyl phosphate synthase small subunit  45.17 
 
 
379 aa  332  7.000000000000001e-90  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.347132  n/a   
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  47.93 
 
 
390 aa  332  8e-90  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  47.78 
 
 
386 aa  332  9e-90  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  45.6 
 
 
440 aa  330  2e-89  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_011663  Sbal223_1051  carbamoyl phosphate synthase small subunit  47.64 
 
 
387 aa  330  2e-89  Shewanella baltica OS223  Bacteria  normal  0.098868  hitchhiker  0.0000017806 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  47 
 
 
386 aa  330  3e-89  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  47.52 
 
 
386 aa  330  3e-89  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  47.38 
 
 
386 aa  329  4e-89  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  47.55 
 
 
359 aa  329  4e-89  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  47.52 
 
 
386 aa  329  4e-89  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_007577  PMT9312_0848  carbamoyl phosphate synthase small subunit  43.15 
 
 
379 aa  329  5.0000000000000004e-89  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  47.12 
 
 
381 aa  328  7e-89  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  46.74 
 
 
396 aa  328  8e-89  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  46.88 
 
 
377 aa  328  8e-89  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  46.07 
 
 
381 aa  328  9e-89  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  46.74 
 
 
386 aa  327  1.0000000000000001e-88  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  47.01 
 
 
378 aa  328  1.0000000000000001e-88  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  47.4 
 
 
380 aa  327  2.0000000000000001e-88  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  47.12 
 
 
391 aa  327  2.0000000000000001e-88  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_007335  PMN2A_0259  carbamoyl phosphate synthase small subunit  45.67 
 
 
384 aa  327  2.0000000000000001e-88  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  47.29 
 
 
381 aa  327  3e-88  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  46.23 
 
 
381 aa  327  3e-88  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  46.53 
 
 
381 aa  326  3e-88  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  46.37 
 
 
379 aa  326  3e-88  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  45.67 
 
 
384 aa  326  3e-88  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  46.86 
 
 
386 aa  326  4.0000000000000003e-88  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  46.32 
 
 
378 aa  326  4.0000000000000003e-88  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  47.76 
 
 
380 aa  325  6e-88  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  47.76 
 
 
380 aa  325  6e-88  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  46.49 
 
 
385 aa  325  8.000000000000001e-88  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  46.83 
 
 
384 aa  325  9e-88  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  46.84 
 
 
379 aa  324  1e-87  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  46.11 
 
 
416 aa  325  1e-87  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  48.16 
 
 
378 aa  324  2e-87  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  47.89 
 
 
386 aa  324  2e-87  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
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