| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2504 |
|---|
| Symbol | |
|---|
| ID | 4604751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3009178 |
|---|
| End bp | 3010323 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639781899 |
|---|
| Product | carbamoyl phosphate synthase small subunit |
|---|
| Protein accession | YP_928376 |
|---|
| Protein GI | 119775636 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.323519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACAAAGT CTGCCTTACT CGTACTCGAA GATGGAACCC TGTTCTCAGG CACTGCAATC
GGTGCTGATG GAATTGCTGT CGGAGAAGTC GTTTTTAACA CTTCCATGAC AGGCTATCAA
GAGATATTGA CGGATCCTTC TTATTCCCGC CAGATAGTCA CACTGACTTA TCCGCACATC
GGTAATACAG GTACCAACGA TGAAGACACT GAATCCAGTG CTGTTCATGC CTGTGGTCTC
ATCATTCGCG ATCTTCCTTT AATCGCCAGC AGTTTCCGTT CCACCCAATC CTTAAGTGAT
TACCTCAAAG CCAACAACGT GGTAGGTATC GCCGATATCG ACACCCGTAA GCTGACCCGT
ATTCTGCGTG AAAAGGGCGC TCAGGCCGGT TGTATTCTGG TGGGTGACCT GGACAGCGAT
AAGGCACTGG CTGCCGCCAA AGCCTTCCCT GGTTTGAAAG GCATGGATTT GGCGAAAGAA
GTGACCACCG CCGAGCGCTA CCAGTGGCGC AGTGGCAGCT GGCGTCTGGA AGGCGGTCTG
CCTTCAGATA CCCCAGAATC TGAACTCAAG TTCAAAGTGG TTGCCTACGA TTACGGCGTT
AAAACCAACA TTCTGCGTAT GCTGGTAGAC CGTGGTTGTG ACGTGACCGT GGTGCCTGCC
AAAACTCCAG CCAGCGAAGT GCTGGCCATG AATCCTGACG GTGTGTTTCT GTCCAACGGC
CCTGGTGACC CAGAGCCATG TGACTATGCC ATTGCCGCGA TTCAGGAAAT TCTCACCACA
GACATCCCGG TATTCGGTAT CTGTTTGGGC CATCAGCTGC TCGGTCTCGC CAGCGGTGCC
AAGACCCTGA AAATGAAGTT TGGCCACCAT GGTGCCAACC ACCCAGTGGG TGATGTTGAA
AAGGGTACTG TGATGATCAC CAGCCAGAAC CACGGTTTTG CGGTTGATGA GGCTACACTG
CCTGCCAACC TCAAGGTGAC TCACAAGTCA CTGTTCGATG GTTCTTTGCA GGGCATTCAC
CGCACCGACA AGCCTGCGTT CAGCTTCCAG GGTCACCCTG AAGCCAGCCC AGGTCCACAC
GACTGTGCCC CGCTGTTCGA CCATTTCATC GAACTGATTG AAGAGTATCG CAAGAACGCC
AAGTAA
|
|---|
| Protein sequence | MTKSALLVLE DGTLFSGTAI GADGIAVGEV VFNTSMTGYQ EILTDPSYSR QIVTLTYPHI
GNTGTNDEDT ESSAVHACGL IIRDLPLIAS SFRSTQSLSD YLKANNVVGI ADIDTRKLTR
ILREKGAQAG CILVGDLDSD KALAAAKAFP GLKGMDLAKE VTTAERYQWR SGSWRLEGGL
PSDTPESELK FKVVAYDYGV KTNILRMLVD RGCDVTVVPA KTPASEVLAM NPDGVFLSNG
PGDPEPCDYA IAAIQEILTT DIPVFGICLG HQLLGLASGA KTLKMKFGHH GANHPVGDVE
KGTVMITSQN HGFAVDEATL PANLKVTHKS LFDGSLQGIH RTDKPAFSFQ GHPEASPGPH
DCAPLFDHFI ELIEEYRKNA K
|
|---|
| |