More than 300 homologs were found in PanDaTox collection
for query gene Tfu_1056 on replicon NC_007333
Organism: Thermobifida fusca YX



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  100 
 
 
416 aa  847    Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  78.29 
 
 
397 aa  612  9.999999999999999e-175  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  73.87 
 
 
377 aa  554  1e-157  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  71.51 
 
 
400 aa  537  1e-151  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  68.92 
 
 
372 aa  509  1e-143  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  65.95 
 
 
397 aa  501  1e-141  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  65.35 
 
 
395 aa  497  1e-139  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  63.12 
 
 
420 aa  468  9.999999999999999e-131  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  60.79 
 
 
392 aa  465  9.999999999999999e-131  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  58.21 
 
 
420 aa  457  1e-127  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  63.4 
 
 
378 aa  457  1e-127  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  60.42 
 
 
428 aa  452  1.0000000000000001e-126  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  63.44 
 
 
388 aa  453  1.0000000000000001e-126  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  58.88 
 
 
421 aa  449  1e-125  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  59.15 
 
 
397 aa  445  1.0000000000000001e-124  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  61.52 
 
 
370 aa  446  1.0000000000000001e-124  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  62.95 
 
 
405 aa  445  1.0000000000000001e-124  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  58.79 
 
 
403 aa  442  1e-123  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  62.21 
 
 
405 aa  444  1e-123  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  60.15 
 
 
413 aa  444  1e-123  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  62.33 
 
 
376 aa  436  1e-121  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  60.22 
 
 
386 aa  437  1e-121  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  57.25 
 
 
407 aa  434  1e-120  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  60.69 
 
 
394 aa  433  1e-120  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  56.54 
 
 
412 aa  433  1e-120  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  59.32 
 
 
414 aa  434  1e-120  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  60.7 
 
 
387 aa  432  1e-120  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  58.99 
 
 
386 aa  433  1e-120  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  59.57 
 
 
378 aa  431  1e-119  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  60.92 
 
 
378 aa  430  1e-119  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  60.48 
 
 
387 aa  425  1e-118  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  59.69 
 
 
404 aa  426  1e-118  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  60.75 
 
 
387 aa  427  1e-118  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  60.75 
 
 
387 aa  427  1e-118  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  58.98 
 
 
376 aa  425  1e-118  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  59.78 
 
 
378 aa  422  1e-117  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  55.7 
 
 
402 aa  424  1e-117  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  57.32 
 
 
423 aa  418  1e-116  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  52.99 
 
 
386 aa  369  1e-101  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  53.66 
 
 
386 aa  367  1e-100  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  48.78 
 
 
369 aa  365  1e-99  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  52.24 
 
 
374 aa  360  2e-98  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  52.46 
 
 
359 aa  359  4e-98  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  48.1 
 
 
367 aa  354  1e-96  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  47.97 
 
 
369 aa  354  1e-96  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  48.21 
 
 
397 aa  350  2e-95  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  50.81 
 
 
391 aa  350  4e-95  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  47.44 
 
 
369 aa  349  6e-95  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  48.4 
 
 
357 aa  348  1e-94  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  48.98 
 
 
392 aa  348  1e-94  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  48.98 
 
 
392 aa  348  1e-94  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  48.97 
 
 
398 aa  346  5e-94  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  47.94 
 
 
389 aa  346  6e-94  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.17 
 
 
376 aa  345  7e-94  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  45.48 
 
 
356 aa  344  1e-93  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  47.62 
 
 
380 aa  343  2e-93  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  47.2 
 
 
387 aa  344  2e-93  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  47.26 
 
 
384 aa  343  2e-93  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  48.13 
 
 
379 aa  342  5.999999999999999e-93  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  45.93 
 
 
440 aa  342  7e-93  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  46.84 
 
 
381 aa  342  1e-92  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  46.32 
 
 
385 aa  340  2e-92  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  47.64 
 
 
381 aa  341  2e-92  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  47.64 
 
 
381 aa  341  2e-92  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  46.05 
 
 
381 aa  340  2e-92  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  47.64 
 
 
381 aa  341  2e-92  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  47.11 
 
 
383 aa  341  2e-92  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  46.84 
 
 
381 aa  340  2e-92  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  47.09 
 
 
380 aa  341  2e-92  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  47.64 
 
 
381 aa  341  2e-92  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  48.28 
 
 
383 aa  340  2.9999999999999998e-92  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  47.38 
 
 
381 aa  340  2.9999999999999998e-92  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  46.76 
 
 
366 aa  340  2.9999999999999998e-92  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.96 
 
 
359 aa  340  2.9999999999999998e-92  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  48.56 
 
 
385 aa  340  4e-92  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  47.38 
 
 
381 aa  339  5.9999999999999996e-92  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  47.26 
 
 
374 aa  338  8e-92  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  47.38 
 
 
381 aa  338  9e-92  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  47.51 
 
 
380 aa  338  9e-92  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  47.51 
 
 
380 aa  338  9e-92  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  46.83 
 
 
380 aa  338  9e-92  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  46.83 
 
 
380 aa  338  9e-92  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  46.19 
 
 
386 aa  338  9.999999999999999e-92  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  49.22 
 
 
380 aa  337  1.9999999999999998e-91  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  47.12 
 
 
381 aa  337  1.9999999999999998e-91  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  45.38 
 
 
371 aa  337  1.9999999999999998e-91  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  46.72 
 
 
386 aa  337  2.9999999999999997e-91  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  46.58 
 
 
373 aa  336  3.9999999999999995e-91  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  46.72 
 
 
386 aa  336  5e-91  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  48.69 
 
 
378 aa  335  5.999999999999999e-91  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  45.97 
 
 
381 aa  335  5.999999999999999e-91  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  48.16 
 
 
373 aa  335  5.999999999999999e-91  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  46.72 
 
 
386 aa  335  7e-91  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  48.19 
 
 
388 aa  335  7e-91  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  50.14 
 
 
361 aa  335  7e-91  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  46.46 
 
 
386 aa  335  7.999999999999999e-91  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  46.72 
 
 
386 aa  335  7.999999999999999e-91  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  46.98 
 
 
374 aa  335  7.999999999999999e-91  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  335  9e-91  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  46.46 
 
 
386 aa  335  9e-91  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
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