More than 300 homologs were found in PanDaTox collection
for query gene Francci3_3199 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  100 
 
 
421 aa  839    Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  75.43 
 
 
397 aa  591  1e-168  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  66.25 
 
 
388 aa  493  9.999999999999999e-139  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  65.56 
 
 
395 aa  484  1e-135  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  63.24 
 
 
392 aa  470  1.0000000000000001e-131  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  61.15 
 
 
377 aa  459  9.999999999999999e-129  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  61.87 
 
 
420 aa  459  9.999999999999999e-129  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  61.62 
 
 
400 aa  459  9.999999999999999e-129  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  57.79 
 
 
414 aa  452  1.0000000000000001e-126  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  60.91 
 
 
372 aa  454  1.0000000000000001e-126  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  59.14 
 
 
416 aa  449  1e-125  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  60.78 
 
 
386 aa  450  1e-125  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  61.54 
 
 
397 aa  448  1e-125  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  59.15 
 
 
420 aa  449  1e-125  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  62.03 
 
 
378 aa  449  1e-125  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  60.74 
 
 
386 aa  447  1.0000000000000001e-124  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  59.6 
 
 
397 aa  442  1e-123  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  58.93 
 
 
370 aa  439  9.999999999999999e-123  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  54.22 
 
 
407 aa  439  9.999999999999999e-123  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  58.17 
 
 
413 aa  435  1e-121  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  56.04 
 
 
428 aa  436  1e-121  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  58.12 
 
 
387 aa  435  1e-121  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  61.82 
 
 
405 aa  436  1e-121  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  58.38 
 
 
387 aa  437  1e-121  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  57.08 
 
 
423 aa  438  1e-121  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  58.38 
 
 
387 aa  437  1e-121  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  58.54 
 
 
394 aa  431  1e-120  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  58.48 
 
 
376 aa  426  1e-118  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  57.95 
 
 
378 aa  426  1e-118  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  55.17 
 
 
403 aa  426  1e-118  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  58 
 
 
404 aa  417  9.999999999999999e-116  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  56.83 
 
 
405 aa  416  9.999999999999999e-116  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  56.71 
 
 
376 aa  415  9.999999999999999e-116  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  56.09 
 
 
387 aa  412  1e-114  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  54.59 
 
 
402 aa  410  1e-113  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  54.08 
 
 
412 aa  408  1.0000000000000001e-112  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  53.83 
 
 
378 aa  399  9.999999999999999e-111  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  54.39 
 
 
378 aa  400  9.999999999999999e-111  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  46.91 
 
 
376 aa  362  7.0000000000000005e-99  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  51.58 
 
 
386 aa  358  9e-98  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  51.09 
 
 
386 aa  355  6.999999999999999e-97  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  49.38 
 
 
374 aa  352  5.9999999999999994e-96  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  47.85 
 
 
369 aa  348  9e-95  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  48.03 
 
 
373 aa  345  1e-93  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  47.78 
 
 
373 aa  343  2.9999999999999997e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  48.03 
 
 
373 aa  343  4e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  46.75 
 
 
381 aa  340  2.9999999999999998e-92  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  46.91 
 
 
372 aa  338  9.999999999999999e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  46.88 
 
 
391 aa  337  2.9999999999999997e-91  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  45.59 
 
 
366 aa  335  5.999999999999999e-91  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  46.27 
 
 
393 aa  335  5.999999999999999e-91  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  43.83 
 
 
391 aa  333  2e-90  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  43.1 
 
 
384 aa  333  3e-90  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  46.31 
 
 
399 aa  332  6e-90  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  45.85 
 
 
399 aa  332  6e-90  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  45.31 
 
 
359 aa  332  8e-90  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  44.26 
 
 
392 aa  332  9e-90  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  44.79 
 
 
397 aa  332  9e-90  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  44.95 
 
 
367 aa  332  9e-90  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  44.26 
 
 
392 aa  332  1e-89  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  44.59 
 
 
358 aa  331  1e-89  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  45.95 
 
 
379 aa  331  2e-89  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  43.03 
 
 
380 aa  331  2e-89  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  43.03 
 
 
380 aa  331  2e-89  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  44.81 
 
 
369 aa  330  2e-89  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  47.16 
 
 
378 aa  330  4e-89  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  44.01 
 
 
385 aa  330  4e-89  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_013440  Hoch_3947  carbamoyl-phosphate synthase, small subunit  47.41 
 
 
408 aa  330  4e-89  Haliangium ochraceum DSM 14365  Bacteria  normal  0.201135  hitchhiker  0.00383855 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  45.39 
 
 
380 aa  329  5.0000000000000004e-89  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  46.42 
 
 
378 aa  329  5.0000000000000004e-89  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  43.81 
 
 
380 aa  328  1.0000000000000001e-88  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  45.57 
 
 
369 aa  328  1.0000000000000001e-88  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  47.09 
 
 
361 aa  327  3e-88  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  45.32 
 
 
364 aa  326  4.0000000000000003e-88  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  45.68 
 
 
378 aa  326  4.0000000000000003e-88  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  45.43 
 
 
378 aa  326  5e-88  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  43.52 
 
 
386 aa  326  5e-88  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  43.85 
 
 
357 aa  326  5e-88  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  44.09 
 
 
388 aa  325  6e-88  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  46.87 
 
 
390 aa  325  7e-88  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  43.42 
 
 
393 aa  325  8.000000000000001e-88  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  43.14 
 
 
371 aa  325  9e-88  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  44.44 
 
 
374 aa  325  1e-87  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  45.09 
 
 
367 aa  324  1e-87  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  46.17 
 
 
381 aa  325  1e-87  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  46.84 
 
 
383 aa  324  2e-87  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  44.44 
 
 
374 aa  324  2e-87  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  44.07 
 
 
398 aa  323  3e-87  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  44.61 
 
 
392 aa  323  3e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  43.39 
 
 
377 aa  323  3e-87  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  45.78 
 
 
389 aa  323  4e-87  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  43.98 
 
 
389 aa  323  4e-87  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  46.43 
 
 
379 aa  322  6e-87  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  43.6 
 
 
373 aa  322  9.999999999999999e-87  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  45.52 
 
 
372 aa  322  9.999999999999999e-87  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  42.79 
 
 
385 aa  321  9.999999999999999e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  44.34 
 
 
382 aa  321  1.9999999999999998e-86  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  43.28 
 
 
381 aa  321  1.9999999999999998e-86  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  44.19 
 
 
381 aa  321  1.9999999999999998e-86  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_013203  Apar_0612  carbamoyl-phosphate synthase, small subunit  41.63 
 
 
417 aa  320  3e-86  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.348525 
 
 
-
 
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