More than 300 homologs were found in PanDaTox collection
for query gene Strop_1855 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  100 
 
 
386 aa  773    Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  95.08 
 
 
386 aa  736    Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  70.24 
 
 
395 aa  522  1e-147  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  67.08 
 
 
412 aa  518  1e-146  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  66.75 
 
 
392 aa  504  9.999999999999999e-143  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  66.58 
 
 
378 aa  487  1e-136  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  68.38 
 
 
388 aa  483  1e-135  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  66.32 
 
 
397 aa  479  1e-134  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  65.18 
 
 
397 aa  477  1e-133  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  65.86 
 
 
370 aa  472  1e-132  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  63.73 
 
 
397 aa  471  1e-132  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  64.14 
 
 
400 aa  472  1e-132  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  63.25 
 
 
377 aa  467  9.999999999999999e-131  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  62.7 
 
 
378 aa  463  1e-129  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  63.98 
 
 
372 aa  462  1e-129  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  62.89 
 
 
404 aa  461  1e-129  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  63.32 
 
 
420 aa  462  1e-129  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  64.23 
 
 
420 aa  455  1e-127  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  62.17 
 
 
428 aa  451  1.0000000000000001e-126  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  61.24 
 
 
423 aa  449  1e-125  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  60.49 
 
 
421 aa  447  1.0000000000000001e-124  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  60.85 
 
 
376 aa  442  1e-123  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  59.95 
 
 
378 aa  441  9.999999999999999e-123  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  59.27 
 
 
376 aa  441  9.999999999999999e-123  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  60.22 
 
 
416 aa  437  1e-121  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  59.16 
 
 
414 aa  437  1e-121  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  59.06 
 
 
387 aa  434  1e-120  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  60.96 
 
 
405 aa  434  1e-120  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  56.85 
 
 
407 aa  430  1e-119  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  58.82 
 
 
387 aa  430  1e-119  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  58.82 
 
 
387 aa  430  1e-119  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  58.82 
 
 
387 aa  430  1e-119  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  61.01 
 
 
394 aa  423  1e-117  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  56.25 
 
 
403 aa  422  1e-117  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  56.96 
 
 
402 aa  421  1e-116  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  58.91 
 
 
413 aa  421  1e-116  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  60.73 
 
 
405 aa  417  9.999999999999999e-116  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  57.49 
 
 
378 aa  411  1e-114  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  49.74 
 
 
391 aa  362  9e-99  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  52.17 
 
 
386 aa  360  2e-98  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  52.2 
 
 
386 aa  360  2e-98  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.21 
 
 
376 aa  350  2e-95  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  49.74 
 
 
380 aa  350  3e-95  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  48.82 
 
 
385 aa  343  2.9999999999999997e-93  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  46.58 
 
 
369 aa  342  5e-93  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  47.27 
 
 
379 aa  338  7e-92  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  46.56 
 
 
389 aa  338  7e-92  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  47.81 
 
 
392 aa  337  1.9999999999999998e-91  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  47.56 
 
 
392 aa  337  1.9999999999999998e-91  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_013061  Phep_0705  carbamoyl phosphate synthase small subunit  44.8 
 
 
370 aa  334  1e-90  Pedobacter heparinus DSM 2366  Bacteria  normal  0.274558  normal 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  44.09 
 
 
366 aa  334  1e-90  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  45.26 
 
 
369 aa  334  2e-90  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  47.84 
 
 
359 aa  332  5e-90  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  48.95 
 
 
374 aa  332  7.000000000000001e-90  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  44.96 
 
 
384 aa  331  1e-89  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  44.74 
 
 
367 aa  331  1e-89  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  45.69 
 
 
373 aa  330  3e-89  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  45.31 
 
 
374 aa  330  3e-89  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  45.95 
 
 
373 aa  329  4e-89  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  45.18 
 
 
380 aa  327  2.0000000000000001e-88  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  47.37 
 
 
388 aa  327  2.0000000000000001e-88  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_014230  CA2559_05860  carbamoyl-phosphate synthase small subunit  44.12 
 
 
373 aa  327  2.0000000000000001e-88  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.261865  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  44.74 
 
 
369 aa  327  2.0000000000000001e-88  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  45.18 
 
 
380 aa  327  2.0000000000000001e-88  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  45.05 
 
 
374 aa  327  3e-88  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  47.14 
 
 
359 aa  325  7e-88  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_013037  Dfer_4372  carbamoyl phosphate synthase small subunit  43.58 
 
 
368 aa  323  3e-87  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  42.2 
 
 
379 aa  323  3e-87  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  45.36 
 
 
391 aa  323  3e-87  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  47.4 
 
 
372 aa  322  6e-87  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  43.12 
 
 
356 aa  322  7e-87  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0369  carbamoyl phosphate synthase small subunit  44.24 
 
 
372 aa  322  8e-87  Flavobacterium johnsoniae UW101  Bacteria  normal  0.528508  n/a   
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  47.97 
 
 
359 aa  321  9.999999999999999e-87  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_013162  Coch_0275  carbamoyl phosphate synthase small subunit  45.7 
 
 
366 aa  320  1.9999999999999998e-86  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.000180913  n/a   
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  45.48 
 
 
380 aa  320  1.9999999999999998e-86  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  44.59 
 
 
367 aa  321  1.9999999999999998e-86  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  44.65 
 
 
374 aa  320  1.9999999999999998e-86  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  45.85 
 
 
372 aa  320  3e-86  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  43.42 
 
 
371 aa  320  3.9999999999999996e-86  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  44.39 
 
 
374 aa  319  6e-86  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  45.99 
 
 
381 aa  317  2e-85  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_013132  Cpin_1645  carbamoyl phosphate synthase small subunit  42.25 
 
 
369 aa  316  4e-85  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  45.81 
 
 
381 aa  316  4e-85  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  45.43 
 
 
393 aa  316  4e-85  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  45.14 
 
 
369 aa  316  4e-85  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  45.81 
 
 
381 aa  316  5e-85  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5758  carbamoyl-phosphate synthase, small subunit  45.16 
 
 
367 aa  315  9.999999999999999e-85  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  45.55 
 
 
381 aa  315  9.999999999999999e-85  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  45.55 
 
 
381 aa  315  9.999999999999999e-85  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  45.55 
 
 
381 aa  315  9.999999999999999e-85  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  44.42 
 
 
383 aa  314  9.999999999999999e-85  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_007519  Dde_3646  carbamoyl phosphate synthase small subunit  45.13 
 
 
375 aa  315  9.999999999999999e-85  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  45.55 
 
 
381 aa  315  9.999999999999999e-85  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  45.55 
 
 
381 aa  315  9.999999999999999e-85  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_008816  A9601_09091  carbamoyl phosphate synthase small subunit  40.62 
 
 
379 aa  313  1.9999999999999998e-84  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.347132  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  45.55 
 
 
381 aa  314  1.9999999999999998e-84  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  44.91 
 
 
377 aa  313  1.9999999999999998e-84  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  43.09 
 
 
365 aa  314  1.9999999999999998e-84  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  44.24 
 
 
377 aa  314  1.9999999999999998e-84  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  44.68 
 
 
373 aa  313  1.9999999999999998e-84  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
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