More than 300 homologs were found in PanDaTox collection
for query gene Dfer_4372 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_4372  carbamoyl phosphate synthase small subunit  100 
 
 
368 aa  767    Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5758  carbamoyl-phosphate synthase, small subunit  71.98 
 
 
367 aa  560  1e-158  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  65.75 
 
 
365 aa  516  1.0000000000000001e-145  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_013061  Phep_0705  carbamoyl phosphate synthase small subunit  63.71 
 
 
370 aa  484  1e-135  Pedobacter heparinus DSM 2366  Bacteria  normal  0.274558  normal 
 
 
-
 
NC_013132  Cpin_1645  carbamoyl phosphate synthase small subunit  57.78 
 
 
369 aa  457  1e-127  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_05860  carbamoyl-phosphate synthase small subunit  56.44 
 
 
373 aa  446  1.0000000000000001e-124  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.261865  n/a   
 
 
-
 
NC_013162  Coch_0275  carbamoyl phosphate synthase small subunit  56.35 
 
 
366 aa  441  1e-123  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.000180913  n/a   
 
 
-
 
NC_009441  Fjoh_0369  carbamoyl phosphate synthase small subunit  57.38 
 
 
372 aa  444  1e-123  Flavobacterium johnsoniae UW101  Bacteria  normal  0.528508  n/a   
 
 
-
 
NC_013501  Rmar_2002  carbamoyl-phosphate synthase, small subunit  56.23 
 
 
379 aa  417  9.999999999999999e-116  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  48.02 
 
 
391 aa  376  1e-103  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  49.33 
 
 
369 aa  369  1e-101  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  49.87 
 
 
369 aa  365  1e-100  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  47.89 
 
 
379 aa  365  1e-100  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  47.61 
 
 
380 aa  363  2e-99  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  47.61 
 
 
380 aa  363  2e-99  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  49.46 
 
 
371 aa  362  6e-99  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  49.09 
 
 
386 aa  361  1e-98  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  47.35 
 
 
384 aa  360  2e-98  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  49.32 
 
 
369 aa  356  2.9999999999999997e-97  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  47.34 
 
 
388 aa  355  6.999999999999999e-97  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  48.43 
 
 
386 aa  355  1e-96  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  45.29 
 
 
389 aa  352  5e-96  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  49.06 
 
 
367 aa  352  5.9999999999999994e-96  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  47.09 
 
 
385 aa  349  5e-95  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  47.7 
 
 
366 aa  349  5e-95  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  49.46 
 
 
367 aa  348  7e-95  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  48.38 
 
 
381 aa  347  1e-94  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  47.47 
 
 
373 aa  347  2e-94  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  48.67 
 
 
382 aa  347  2e-94  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  47.62 
 
 
376 aa  345  8e-94  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  46.42 
 
 
377 aa  344  1e-93  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  45.81 
 
 
393 aa  343  2.9999999999999997e-93  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  47.86 
 
 
440 aa  343  4e-93  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_013421  Pecwa_3841  carbamoyl phosphate synthase small subunit  49.33 
 
 
382 aa  342  5e-93  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  47.73 
 
 
376 aa  342  5e-93  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  47.96 
 
 
377 aa  342  5e-93  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  48.28 
 
 
382 aa  342  8e-93  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  48.02 
 
 
382 aa  341  1e-92  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_3454  carbamoyl phosphate synthase small subunit  48.8 
 
 
391 aa  341  1e-92  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  47.12 
 
 
416 aa  341  1e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  47.96 
 
 
372 aa  341  1e-92  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_010159  YpAngola_A0784  carbamoyl phosphate synthase small subunit  48.8 
 
 
391 aa  341  1e-92  Yersinia pestis Angola  Bacteria  normal  0.594963  normal  0.491126 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  47.76 
 
 
391 aa  340  2e-92  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  340  2e-92  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  47.48 
 
 
379 aa  340  2e-92  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  340  2.9999999999999998e-92  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  48 
 
 
386 aa  340  2.9999999999999998e-92  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010465  YPK_3583  carbamoyl phosphate synthase small subunit  48.8 
 
 
391 aa  340  2.9999999999999998e-92  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  46.54 
 
 
378 aa  339  5e-92  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  44.91 
 
 
394 aa  338  5.9999999999999996e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  339  5.9999999999999996e-92  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  45.19 
 
 
391 aa  338  5.9999999999999996e-92  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  46.15 
 
 
379 aa  338  7e-92  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  46.97 
 
 
379 aa  337  1.9999999999999998e-91  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  48.03 
 
 
402 aa  337  1.9999999999999998e-91  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  44.95 
 
 
372 aa  337  2.9999999999999997e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  47.61 
 
 
381 aa  336  2.9999999999999997e-91  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  48 
 
 
385 aa  336  3.9999999999999995e-91  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_009832  Spro_0713  carbamoyl phosphate synthase small subunit  48.8 
 
 
382 aa  336  3.9999999999999995e-91  Serratia proteamaculans 568  Bacteria  normal  normal  0.123455 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  47.35 
 
 
390 aa  336  3.9999999999999995e-91  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  46.49 
 
 
379 aa  336  3.9999999999999995e-91  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  47.76 
 
 
382 aa  335  5.999999999999999e-91  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  47.76 
 
 
382 aa  335  5.999999999999999e-91  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  335  5.999999999999999e-91  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  45.6 
 
 
393 aa  335  5.999999999999999e-91  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  335  5.999999999999999e-91  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  335  5.999999999999999e-91  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  335  5.999999999999999e-91  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  47.76 
 
 
382 aa  335  5.999999999999999e-91  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  45.83 
 
 
384 aa  335  7e-91  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  47.77 
 
 
381 aa  335  7e-91  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  47.76 
 
 
391 aa  335  7.999999999999999e-91  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1148  carbamoyl-phosphate synthase, small subunit  45.12 
 
 
387 aa  335  9e-91  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0863472  normal 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  46.09 
 
 
397 aa  335  9e-91  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  47.76 
 
 
382 aa  335  1e-90  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  45.29 
 
 
384 aa  333  2e-90  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  45.58 
 
 
383 aa  334  2e-90  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  44.5 
 
 
380 aa  333  2e-90  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  46.46 
 
 
388 aa  333  3e-90  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  48.27 
 
 
386 aa  333  4e-90  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  47.73 
 
 
381 aa  333  4e-90  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  46.24 
 
 
373 aa  332  5e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_15771  carbamoyl phosphate synthase small subunit  44.74 
 
 
379 aa  332  7.000000000000001e-90  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007335  PMN2A_0259  carbamoyl phosphate synthase small subunit  45.29 
 
 
384 aa  332  7.000000000000001e-90  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_1152  carbamoyl phosphate synthase small subunit  44.41 
 
 
386 aa  332  7.000000000000001e-90  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2703  carbamoyl-phosphate synthase small subunit  47.3 
 
 
388 aa  332  7.000000000000001e-90  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.614253 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  47.33 
 
 
381 aa  332  9e-90  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  47.47 
 
 
359 aa  331  1e-89  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  48.13 
 
 
381 aa  331  1e-89  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  46.19 
 
 
390 aa  330  2e-89  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  47.09 
 
 
359 aa  330  2e-89  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  46.19 
 
 
390 aa  330  2e-89  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  46.26 
 
 
396 aa  330  2e-89  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  47.47 
 
 
382 aa  330  2e-89  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2060  carbamoyl phosphate synthase small subunit  47.21 
 
 
394 aa  331  2e-89  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.745912 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  43.63 
 
 
397 aa  330  2e-89  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  47.48 
 
 
386 aa  330  2e-89  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  45.62 
 
 
374 aa  330  3e-89  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  47.48 
 
 
386 aa  330  3e-89  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  45.21 
 
 
387 aa  330  3e-89  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
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