| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2839 |
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| Symbol | |
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| ID | 4922346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3366114 |
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| End bp | 3367286 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164436 |
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| Product | carbamoyl phosphate synthase small subunit |
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| Protein accession | YP_001094964 |
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| Protein GI | 127513767 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
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| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00340084 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0286195 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTGGC TCTTTTCGGA GGTCGCGTTG ACAAAGTCTG CCTTACTCGT ACTCGAAGAT
GGAACCGTAT TCTCTGGCAC TGCAATCGGT GCTGATGGAC TCGCAGTTGG TGAAGTGGTA
TTTAACACTT CCATGACGGG TTACCAAGAG ATCCTCACGG ATCCTTCCTA TTCTCGTCAA
ATTGTTACTC TAACCTACCC GCACATTGGT AACACTGGTA CCAATAGTGA AGATACCGAA
TCTGAAGCCG TCCATGCCTG TGGTCTGATC ATCCGCGATC TACCGCTACT GGCGAGCAAC
TTCAGAAATG AGCAATCCCT TAGCGATTAC CTAAAAAGCA ATAATGTTGT AGGCATTGCC
GATATCGACA CGCGTAAACT AACACGTATC CTCAGGGAAA AAGGGGCACA AGCGGGTGCC
ATCTTAGTGG GTGACATGGA TGAAGCTAAG GCGCTGGCGG CTGCCAAGGC GTTCCCTGGC
TTGAAAGGCA TGGACTTGGC CAAAGAAGTG ACCACGCAGA AGCAATACCA ATGGCGCAGC
GGTAGCTGGC GTCTGGTGGG CGGCCTGCCG AGTGACACTC CTGAGTCAGA ACTGAAATAC
AAGGTCGTGG CCTACGACTA CGGTGTTAAG CGCAACATCC TGCGTATGCT GGTTGACCGT
GGCTGCGATG TGACCGTAGT TCCGGCGCAA ACCCCAGCTG CCGAAGTGCT GGCGATGAAT
CCAGATGGCA TCTTCCTGTC AAACGGCCCT GGTGACCCAG AGCCATGTGA CTACGCCATC
GAAGCGATTC AGGCTTTCCT CAAGACTGAC ATTCCACTCT TTGGTATCTG CCTTGGCCAT
CAGCTATTGG CACTGGCCTC TGGCGCTAAG ACGCTGAAGA TGAAGTTTGG TCACCATGGT
GCCAACCATC CGGTAAGCAA CCTGGAGAAG GGCAACGTGA TGATCACCAG CCAGAACCAT
GGTTTTGCTG CCGATGAGAC CAGCCTGCCG GCCAACGTTA AGGTGACTCA CAAGTCGCTG
TTTGATGGCT CGCTACAGGG TATTCACCTG ACCGACAAGC CAGCGTTCAG CTTCCAGGGC
CACCCTGAGG CAAGCCCGGG TCCACACGAC GCCGCGCCGC TGTTCGATCA CTTTATCGAG
TTGATCGAAG AATATCGTCA TAACGCCAAG TAG
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| Protein sequence | MAWLFSEVAL TKSALLVLED GTVFSGTAIG ADGLAVGEVV FNTSMTGYQE ILTDPSYSRQ
IVTLTYPHIG NTGTNSEDTE SEAVHACGLI IRDLPLLASN FRNEQSLSDY LKSNNVVGIA
DIDTRKLTRI LREKGAQAGA ILVGDMDEAK ALAAAKAFPG LKGMDLAKEV TTQKQYQWRS
GSWRLVGGLP SDTPESELKY KVVAYDYGVK RNILRMLVDR GCDVTVVPAQ TPAAEVLAMN
PDGIFLSNGP GDPEPCDYAI EAIQAFLKTD IPLFGICLGH QLLALASGAK TLKMKFGHHG
ANHPVSNLEK GNVMITSQNH GFAADETSLP ANVKVTHKSL FDGSLQGIHL TDKPAFSFQG
HPEASPGPHD AAPLFDHFIE LIEEYRHNAK
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