More than 300 homologs were found in PanDaTox collection
for query gene Franean1_1709 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  100 
 
 
397 aa  801    Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  74.94 
 
 
421 aa  591  1e-168  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  69.95 
 
 
395 aa  512  1e-144  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  65.95 
 
 
416 aa  501  1e-141  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  68.38 
 
 
400 aa  498  1e-140  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  68.58 
 
 
392 aa  499  1e-140  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  69.4 
 
 
388 aa  500  1e-140  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  67.4 
 
 
397 aa  494  1e-139  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  67.68 
 
 
377 aa  488  1e-137  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  67.3 
 
 
372 aa  483  1e-135  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  65.87 
 
 
386 aa  480  1e-134  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  66.32 
 
 
386 aa  479  1e-134  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  63.61 
 
 
420 aa  479  1e-134  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  67.29 
 
 
378 aa  480  1e-134  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  63.61 
 
 
397 aa  462  1e-129  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  62.3 
 
 
428 aa  464  1e-129  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  62.96 
 
 
420 aa  461  9.999999999999999e-129  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  63.59 
 
 
370 aa  457  1e-127  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  59.37 
 
 
412 aa  453  1.0000000000000001e-126  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  58.51 
 
 
414 aa  454  1.0000000000000001e-126  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  57.88 
 
 
407 aa  446  1.0000000000000001e-124  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  62.18 
 
 
405 aa  445  1.0000000000000001e-124  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  59.95 
 
 
413 aa  446  1.0000000000000001e-124  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  61.04 
 
 
423 aa  443  1e-123  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  61.75 
 
 
378 aa  439  9.999999999999999e-123  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  60.81 
 
 
376 aa  435  1e-121  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  55.81 
 
 
403 aa  432  1e-120  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  59.2 
 
 
387 aa  433  1e-120  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  60.05 
 
 
387 aa  428  1e-119  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  58.18 
 
 
402 aa  428  1e-119  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  60.05 
 
 
387 aa  429  1e-119  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  60.11 
 
 
394 aa  429  1e-119  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  60.05 
 
 
387 aa  429  1e-119  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  60 
 
 
376 aa  427  1e-118  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  59.21 
 
 
404 aa  426  1e-118  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  59.38 
 
 
405 aa  417  9.999999999999999e-116  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  58.06 
 
 
378 aa  412  1e-114  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  56.83 
 
 
378 aa  404  1e-111  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  53.79 
 
 
386 aa  377  1e-103  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.43 
 
 
376 aa  373  1e-102  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  53.14 
 
 
386 aa  370  1e-101  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  51.23 
 
 
369 aa  363  3e-99  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  51.05 
 
 
374 aa  358  9e-98  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  47.95 
 
 
391 aa  353  2e-96  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  50.26 
 
 
373 aa  352  5.9999999999999994e-96  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  50.26 
 
 
373 aa  352  5.9999999999999994e-96  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  49.34 
 
 
372 aa  348  1e-94  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  47.07 
 
 
392 aa  348  1e-94  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  47.07 
 
 
392 aa  348  1e-94  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  49.47 
 
 
373 aa  347  2e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  47.58 
 
 
397 aa  346  3e-94  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  46.72 
 
 
398 aa  346  4e-94  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  48 
 
 
381 aa  346  4e-94  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  46.76 
 
 
367 aa  345  8e-94  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  48.54 
 
 
393 aa  345  8.999999999999999e-94  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  47.85 
 
 
391 aa  345  1e-93  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  46.51 
 
 
369 aa  343  2e-93  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  47.35 
 
 
379 aa  342  5.999999999999999e-93  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  48.17 
 
 
380 aa  342  7e-93  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  48.13 
 
 
399 aa  342  7e-93  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  48.15 
 
 
381 aa  342  7e-93  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  48.15 
 
 
381 aa  341  1e-92  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  47.61 
 
 
399 aa  341  1e-92  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  47.73 
 
 
374 aa  340  2e-92  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  48.15 
 
 
381 aa  340  2e-92  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  47.3 
 
 
390 aa  341  2e-92  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  47.68 
 
 
369 aa  340  2.9999999999999998e-92  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  47.88 
 
 
381 aa  339  4e-92  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  47.88 
 
 
381 aa  340  4e-92  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  47.88 
 
 
381 aa  339  4e-92  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  47.88 
 
 
381 aa  339  4e-92  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  47.88 
 
 
381 aa  339  4e-92  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  46.9 
 
 
366 aa  338  9.999999999999999e-92  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  45.43 
 
 
381 aa  338  9.999999999999999e-92  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  47.21 
 
 
383 aa  337  1.9999999999999998e-91  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  44.3 
 
 
393 aa  337  1.9999999999999998e-91  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  46.48 
 
 
390 aa  337  2.9999999999999997e-91  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  46.7 
 
 
380 aa  337  2.9999999999999997e-91  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  46.93 
 
 
374 aa  336  3.9999999999999995e-91  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  46.56 
 
 
359 aa  336  5e-91  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  49.08 
 
 
378 aa  335  7e-91  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  50.14 
 
 
361 aa  335  7e-91  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  46.7 
 
 
373 aa  335  7e-91  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  45.67 
 
 
440 aa  335  7.999999999999999e-91  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  48.29 
 
 
383 aa  335  7.999999999999999e-91  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  45.95 
 
 
381 aa  333  2e-90  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  46.63 
 
 
367 aa  334  2e-90  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  44.76 
 
 
385 aa  334  2e-90  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  46.34 
 
 
381 aa  334  2e-90  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  46.3 
 
 
380 aa  333  3e-90  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  44.65 
 
 
384 aa  333  4e-90  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  47.59 
 
 
385 aa  332  5e-90  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  46.48 
 
 
385 aa  332  6e-90  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  45.57 
 
 
386 aa  332  7.000000000000001e-90  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  45.31 
 
 
386 aa  332  8e-90  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  46.21 
 
 
381 aa  332  9e-90  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  46.17 
 
 
380 aa  332  9e-90  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  46.17 
 
 
380 aa  332  9e-90  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  45.57 
 
 
386 aa  332  9e-90  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_013037  Dfer_4372  carbamoyl phosphate synthase small subunit  43.63 
 
 
368 aa  330  2e-89  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
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