More than 300 homologs were found in PanDaTox collection
for query gene Amir_5242 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  100 
 
 
370 aa  748    Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  73.71 
 
 
378 aa  558  1e-158  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  69.89 
 
 
378 aa  522  1e-147  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  68.38 
 
 
397 aa  509  1e-143  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  67.3 
 
 
378 aa  501  1e-141  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  68.65 
 
 
387 aa  495  1e-139  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  68.65 
 
 
387 aa  494  1e-139  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  68.65 
 
 
387 aa  495  1e-139  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  66.67 
 
 
376 aa  491  9.999999999999999e-139  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  66.49 
 
 
392 aa  489  1e-137  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  65.41 
 
 
387 aa  490  1e-137  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  67.03 
 
 
388 aa  488  1e-137  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  65.67 
 
 
400 aa  484  1e-135  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  65.67 
 
 
395 aa  484  1e-135  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  66.3 
 
 
376 aa  483  1e-135  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  65.86 
 
 
386 aa  471  1e-132  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  65.86 
 
 
386 aa  472  1e-132  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  62.47 
 
 
414 aa  467  9.999999999999999e-131  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  62.01 
 
 
404 aa  462  1e-129  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  63.39 
 
 
372 aa  463  1e-129  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  65.94 
 
 
397 aa  461  1e-129  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  61.32 
 
 
420 aa  458  9.999999999999999e-129  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  63.35 
 
 
423 aa  460  9.999999999999999e-129  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  58.48 
 
 
412 aa  458  9.999999999999999e-129  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  61.64 
 
 
428 aa  457  1e-127  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  63.59 
 
 
397 aa  457  1e-127  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  61.11 
 
 
420 aa  455  1e-127  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  62.72 
 
 
405 aa  451  1e-125  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  63.61 
 
 
378 aa  451  1e-125  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  61.52 
 
 
416 aa  446  1.0000000000000001e-124  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  62.09 
 
 
377 aa  446  1.0000000000000001e-124  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  65.45 
 
 
405 aa  444  1e-123  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  62.77 
 
 
394 aa  442  1e-123  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  58.63 
 
 
421 aa  440  9.999999999999999e-123  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  58.72 
 
 
413 aa  436  1e-121  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  58.42 
 
 
402 aa  424  1e-117  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  54.97 
 
 
407 aa  419  1e-116  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  54.57 
 
 
403 aa  416  9.999999999999999e-116  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  51.58 
 
 
393 aa  361  1e-98  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  48.13 
 
 
369 aa  348  1e-94  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  49.21 
 
 
381 aa  344  1e-93  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  48.69 
 
 
377 aa  344  2e-93  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  49.21 
 
 
379 aa  344  2e-93  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  49.08 
 
 
378 aa  342  7e-93  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.16 
 
 
376 aa  340  2e-92  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  50.13 
 
 
386 aa  340  2e-92  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  48.4 
 
 
399 aa  340  2.9999999999999998e-92  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  48.4 
 
 
399 aa  340  2.9999999999999998e-92  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  47.58 
 
 
367 aa  339  4e-92  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  47.77 
 
 
378 aa  338  5.9999999999999996e-92  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  46.13 
 
 
369 aa  339  5.9999999999999996e-92  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  47.38 
 
 
381 aa  339  5.9999999999999996e-92  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  50.39 
 
 
386 aa  338  7e-92  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  45.97 
 
 
381 aa  338  9e-92  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  47.24 
 
 
382 aa  337  1.9999999999999998e-91  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  48 
 
 
390 aa  337  1.9999999999999998e-91  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  47.15 
 
 
384 aa  336  2.9999999999999997e-91  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  48.77 
 
 
359 aa  336  2.9999999999999997e-91  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  48.01 
 
 
391 aa  335  7.999999999999999e-91  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  46.98 
 
 
378 aa  334  1e-90  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  48.29 
 
 
381 aa  334  1e-90  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  48.03 
 
 
381 aa  334  2e-90  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  48.03 
 
 
381 aa  333  2e-90  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  48.03 
 
 
381 aa  334  2e-90  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  45 
 
 
440 aa  334  2e-90  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  48.03 
 
 
381 aa  334  2e-90  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  48.03 
 
 
381 aa  334  2e-90  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  48.03 
 
 
384 aa  332  4e-90  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  47.77 
 
 
381 aa  332  5e-90  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  47.12 
 
 
381 aa  332  5e-90  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  47.23 
 
 
379 aa  332  5e-90  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  45.83 
 
 
391 aa  332  7.000000000000001e-90  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  47.77 
 
 
381 aa  332  7.000000000000001e-90  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  46.79 
 
 
369 aa  332  7.000000000000001e-90  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  45.83 
 
 
382 aa  331  1e-89  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  45.83 
 
 
382 aa  331  1e-89  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  45.83 
 
 
382 aa  331  1e-89  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  45.83 
 
 
382 aa  331  1e-89  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  45.83 
 
 
382 aa  331  1e-89  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  45.83 
 
 
382 aa  331  1e-89  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  45.83 
 
 
382 aa  331  1e-89  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  46.03 
 
 
358 aa  330  2e-89  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  45.03 
 
 
374 aa  330  3e-89  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  47.12 
 
 
372 aa  330  3e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.14 
 
 
359 aa  330  3e-89  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  43.87 
 
 
356 aa  330  4e-89  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  45.57 
 
 
382 aa  329  4e-89  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  47.24 
 
 
378 aa  329  5.0000000000000004e-89  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  47.26 
 
 
373 aa  328  6e-89  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  46.6 
 
 
387 aa  329  6e-89  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  45.79 
 
 
378 aa  328  7e-89  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  47.52 
 
 
383 aa  328  8e-89  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  47.64 
 
 
378 aa  328  9e-89  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  47.77 
 
 
378 aa  328  1.0000000000000001e-88  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  45.93 
 
 
380 aa  328  1.0000000000000001e-88  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  47.64 
 
 
378 aa  328  1.0000000000000001e-88  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  47.64 
 
 
386 aa  328  1.0000000000000001e-88  Pseudomonas putida F1  Bacteria  normal  normal  0.740896 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  47 
 
 
373 aa  328  1.0000000000000001e-88  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  46.38 
 
 
396 aa  327  2.0000000000000001e-88  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  46.97 
 
 
391 aa  327  2.0000000000000001e-88  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
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