More than 300 homologs were found in PanDaTox collection
for query gene Gobs_3133 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  100 
 
 
388 aa  777    Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  70.41 
 
 
400 aa  510  1e-143  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  68 
 
 
420 aa  508  1e-143  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  69.86 
 
 
395 aa  509  1e-143  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  67.55 
 
 
428 aa  505  9.999999999999999e-143  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  69.15 
 
 
378 aa  506  9.999999999999999e-143  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  69.38 
 
 
372 aa  502  1e-141  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  66.15 
 
 
392 aa  502  1e-141  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  69.4 
 
 
397 aa  500  1e-140  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  65.86 
 
 
397 aa  497  1e-139  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  65.49 
 
 
421 aa  493  9.999999999999999e-139  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  66.49 
 
 
377 aa  488  1e-137  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  67.03 
 
 
370 aa  488  1e-136  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  69.42 
 
 
397 aa  487  1e-136  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  68.38 
 
 
386 aa  483  1e-135  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  68.11 
 
 
386 aa  482  1e-135  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  65.09 
 
 
423 aa  479  1e-134  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  64.55 
 
 
420 aa  478  1e-134  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  65.82 
 
 
405 aa  481  1e-134  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  62.47 
 
 
414 aa  475  1e-133  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  64.75 
 
 
378 aa  464  9.999999999999999e-131  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  62.82 
 
 
413 aa  458  9.999999999999999e-129  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  59.02 
 
 
407 aa  458  9.999999999999999e-129  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  64.66 
 
 
405 aa  457  1e-127  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  62.27 
 
 
404 aa  454  1.0000000000000001e-126  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  63.44 
 
 
416 aa  453  1.0000000000000001e-126  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  60 
 
 
412 aa  452  1.0000000000000001e-126  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  62.7 
 
 
387 aa  452  1.0000000000000001e-126  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  62.7 
 
 
387 aa  452  1.0000000000000001e-126  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  62.67 
 
 
387 aa  450  1e-125  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  64.63 
 
 
394 aa  449  1e-125  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  62.43 
 
 
387 aa  450  1e-125  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  62.02 
 
 
376 aa  448  1e-125  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  60.7 
 
 
402 aa  445  1.0000000000000001e-124  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  61.33 
 
 
378 aa  442  1e-123  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  61.73 
 
 
376 aa  442  1e-123  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  56.22 
 
 
403 aa  431  1e-120  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  59.73 
 
 
378 aa  432  1e-120  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  57.55 
 
 
386 aa  390  1e-107  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  56.41 
 
 
386 aa  383  1e-105  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  49.6 
 
 
376 aa  360  3e-98  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  49.47 
 
 
379 aa  359  5e-98  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  50.55 
 
 
359 aa  359  6e-98  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  50 
 
 
393 aa  356  3.9999999999999996e-97  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  47.89 
 
 
384 aa  354  1e-96  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  48.7 
 
 
388 aa  350  2e-95  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  47.92 
 
 
385 aa  350  2e-95  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  50.54 
 
 
391 aa  347  2e-94  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  47.79 
 
 
391 aa  344  1e-93  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  48.01 
 
 
380 aa  344  2e-93  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  48.01 
 
 
380 aa  344  2e-93  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  47.11 
 
 
389 aa  343  2.9999999999999997e-93  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  50.66 
 
 
373 aa  343  4e-93  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  49.87 
 
 
374 aa  342  8e-93  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.28 
 
 
359 aa  342  8e-93  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  50.39 
 
 
373 aa  341  2e-92  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  50.92 
 
 
373 aa  340  2e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  46.83 
 
 
373 aa  340  2.9999999999999998e-92  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  50.26 
 
 
372 aa  339  4e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  47.17 
 
 
367 aa  339  5.9999999999999996e-92  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  47.45 
 
 
369 aa  337  1.9999999999999998e-91  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  49.48 
 
 
380 aa  336  5e-91  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  46.17 
 
 
374 aa  334  1e-90  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  46.44 
 
 
374 aa  334  2e-90  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  47.24 
 
 
383 aa  334  2e-90  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  46.01 
 
 
369 aa  332  8e-90  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  45.6 
 
 
373 aa  332  9e-90  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  47.31 
 
 
390 aa  331  1e-89  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  46.7 
 
 
374 aa  330  2e-89  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  46.54 
 
 
365 aa  331  2e-89  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_013203  Apar_0612  carbamoyl-phosphate synthase, small subunit  44.42 
 
 
417 aa  330  2e-89  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.348525 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  46.15 
 
 
392 aa  329  4e-89  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  46.8 
 
 
358 aa  329  4e-89  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  46.44 
 
 
374 aa  328  7e-89  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  46.15 
 
 
392 aa  328  8e-89  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  44.62 
 
 
440 aa  328  1.0000000000000001e-88  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  46.05 
 
 
380 aa  327  1.0000000000000001e-88  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  47.88 
 
 
373 aa  327  2.0000000000000001e-88  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  47.31 
 
 
399 aa  327  2.0000000000000001e-88  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  47.04 
 
 
399 aa  326  3e-88  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  44.92 
 
 
369 aa  327  3e-88  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  50.82 
 
 
361 aa  326  4.0000000000000003e-88  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1915  carbamoyl-phosphate synthase, small subunit  46.25 
 
 
390 aa  326  4.0000000000000003e-88  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  47.86 
 
 
385 aa  324  2e-87  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  45.62 
 
 
387 aa  324  2e-87  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  45.36 
 
 
366 aa  323  4e-87  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  46.47 
 
 
367 aa  323  4e-87  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  46.48 
 
 
381 aa  323  4e-87  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  42.58 
 
 
356 aa  323  4e-87  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  47.61 
 
 
381 aa  323  4e-87  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  46.98 
 
 
373 aa  322  6e-87  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  44.36 
 
 
384 aa  322  6e-87  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  47.37 
 
 
383 aa  322  7e-87  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0705  carbamoyl phosphate synthase small subunit  45.86 
 
 
370 aa  322  9.000000000000001e-87  Pedobacter heparinus DSM 2366  Bacteria  normal  0.274558  normal 
 
 
-
 
NC_013037  Dfer_4372  carbamoyl phosphate synthase small subunit  45.08 
 
 
368 aa  321  9.999999999999999e-87  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  45.18 
 
 
357 aa  321  9.999999999999999e-87  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  46.44 
 
 
381 aa  321  9.999999999999999e-87  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  46.61 
 
 
364 aa  320  1.9999999999999998e-86  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  45.07 
 
 
377 aa  320  1.9999999999999998e-86  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  43.47 
 
 
379 aa  320  3e-86  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
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