| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0705 |
|---|
| Symbol | |
|---|
| ID | 8251793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 813012 |
|---|
| End bp | 814124 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644934354 |
|---|
| Product | carbamoyl phosphate synthase small subunit |
|---|
| Protein accession | YP_003090989 |
|---|
| Protein GI | 255530617 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.274558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAACT ACACCAAGTT ACCTGCTATC TTGTTACTGG CCGATGGAAC TGTATATTAC
GGTAAAGCTG CCGGAAAAAT AGGCACTACC ACTGGCGAGA TCTGTTTTAA CACCGGAATG
ACTGGATATC AGGAAATTTT TACTGATCCT TCATACTTCG GTCAGATCAT GGTAACCACC
AATGCGCATA TTGGAAATTA CGGGATACAC AAAGAAGAGA TCGAATCGGA CAGCATTAAA
ATAGCAGGAC TGGTTTGTAA AAACTACAAC ATCGGTTTCA GCCGTAAAGA AGCTTCAGAA
TCTATACAGG ATTATTTTCA GAATGAAAAC ATTGTTGGTA TTTCCGATAT AGATACCCGT
GCACTGGTAC GTCACATCAG GCATAAGGGA GCAATGAATG CGATCATCTC TTCTGAAATT
ACTGATCTGG AAGAACTAAA AGCTAAACTT GCTGAAGTGC CTTCTATGGA CGGACTGGAG
CTGTCTTCGC AGGTTTCGAC CAAAGAACCT TATTTCTATG GTTCGCCTGA GGCCACTTAT
AAAATAGCAG CGTTAGATCT GGGTATTAAA AAGAACATCC TGCGCAACTT TGACAGCAGG
GATGCCTATG TCCAGGTTTT CCCGGCAAAA ACCAGTTTTG AAGAGATGGA CAAATGGGGT
GCAGATGGTT ATTTTATTTC TAACGGTCCC GGCGACCCTT CGGCTATGCC TTATGCCATA
GAGACGGTAA AAAAAGTTTT AGCAGCCGAA AAGCCGATGT TTGGCATTTG CTTAGGCCAT
CAGTTACTTG CTGAGGCCAA TGGAATTGGT ACCATGAAAA TGTTTAACGG TCACCGTGGT
TTAAACCATC CTGTAAAAAA CATCATTAAA AATCACTGCG AGGTAACTTC GCAGAACCAT
GGTTTTGGTG TAATCCCTGA TGAAGTAAGA AGCTCTGACA AGGTAGAAAT AACCCACGTT
AATTTAAATG ACCAGTCTAT CGAAGGTATC CGTGTAAAAG GTAAAAAAGC ATTTTCAGTA
CAATATCATC CTGAATCTTC TCCGGGCCCT CACGATTCGC GCTACCTTTT CGATGATTTC
ATTGGAATGA TTAAGGGCGA ACTGACCTGG TAA
|
|---|
| Protein sequence | MTNYTKLPAI LLLADGTVYY GKAAGKIGTT TGEICFNTGM TGYQEIFTDP SYFGQIMVTT
NAHIGNYGIH KEEIESDSIK IAGLVCKNYN IGFSRKEASE SIQDYFQNEN IVGISDIDTR
ALVRHIRHKG AMNAIISSEI TDLEELKAKL AEVPSMDGLE LSSQVSTKEP YFYGSPEATY
KIAALDLGIK KNILRNFDSR DAYVQVFPAK TSFEEMDKWG ADGYFISNGP GDPSAMPYAI
ETVKKVLAAE KPMFGICLGH QLLAEANGIG TMKMFNGHRG LNHPVKNIIK NHCEVTSQNH
GFGVIPDEVR SSDKVEITHV NLNDQSIEGI RVKGKKAFSV QYHPESSPGP HDSRYLFDDF
IGMIKGELTW
|
|---|
| |