More than 300 homologs were found in PanDaTox collection
for query gene Caci_2404 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  100 
 
 
392 aa  808    Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  73.32 
 
 
395 aa  556  1e-157  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  67.86 
 
 
420 aa  542  1e-153  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  70.48 
 
 
397 aa  533  1e-150  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  70.35 
 
 
428 aa  531  1e-150  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  70.68 
 
 
400 aa  521  1e-147  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  71.73 
 
 
378 aa  524  1e-147  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  68.73 
 
 
405 aa  514  1e-144  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  68.42 
 
 
420 aa  514  1e-144  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  66.75 
 
 
386 aa  504  9.999999999999999e-143  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  65.26 
 
 
414 aa  505  9.999999999999999e-143  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  67.27 
 
 
413 aa  506  9.999999999999999e-143  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  66.75 
 
 
386 aa  505  9.999999999999999e-143  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  66.15 
 
 
388 aa  502  1e-141  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  68.58 
 
 
397 aa  499  1e-140  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  61.65 
 
 
412 aa  493  9.999999999999999e-139  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  62.4 
 
 
407 aa  494  9.999999999999999e-139  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  66.4 
 
 
377 aa  492  9.999999999999999e-139  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  65.44 
 
 
423 aa  490  1e-137  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  66.49 
 
 
370 aa  489  1e-137  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  66.21 
 
 
372 aa  484  1e-136  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  65.76 
 
 
397 aa  487  1e-136  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  61.56 
 
 
403 aa  478  1e-134  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  64.75 
 
 
405 aa  478  1e-134  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  64.44 
 
 
378 aa  479  1e-134  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  59.7 
 
 
404 aa  472  1e-132  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  62.98 
 
 
421 aa  470  1.0000000000000001e-131  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  60.79 
 
 
416 aa  465  9.999999999999999e-131  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  61.96 
 
 
378 aa  466  9.999999999999999e-131  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  62.67 
 
 
378 aa  463  1e-129  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  62.94 
 
 
376 aa  464  1e-129  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  61.73 
 
 
387 aa  458  9.999999999999999e-129  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  61.79 
 
 
387 aa  461  9.999999999999999e-129  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  61.58 
 
 
394 aa  457  1e-127  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  61.73 
 
 
387 aa  457  1e-127  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  61.73 
 
 
387 aa  457  1e-127  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  60.75 
 
 
402 aa  454  1.0000000000000001e-126  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  61.89 
 
 
376 aa  448  1e-125  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  51.47 
 
 
386 aa  363  3e-99  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  53.21 
 
 
386 aa  362  6e-99  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.04 
 
 
376 aa  347  3e-94  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  48.11 
 
 
369 aa  345  6e-94  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  47.67 
 
 
391 aa  339  4e-92  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  45.97 
 
 
369 aa  337  1.9999999999999998e-91  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  47 
 
 
379 aa  336  5e-91  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  48.68 
 
 
374 aa  335  7e-91  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  47.89 
 
 
393 aa  335  1e-90  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  48.31 
 
 
380 aa  335  1e-90  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  48.1 
 
 
359 aa  333  2e-90  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  46.43 
 
 
392 aa  334  2e-90  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  46.43 
 
 
392 aa  334  2e-90  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  45.85 
 
 
369 aa  333  3e-90  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  46.88 
 
 
367 aa  333  3e-90  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  48.01 
 
 
373 aa  332  6e-90  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  47.07 
 
 
385 aa  332  7.000000000000001e-90  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  46.49 
 
 
366 aa  331  2e-89  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  46.34 
 
 
374 aa  330  2e-89  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_011830  Dhaf_3203  carbamoyl-phosphate synthase, small subunit  48.25 
 
 
368 aa  329  4e-89  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  46.86 
 
 
374 aa  329  5.0000000000000004e-89  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  47.31 
 
 
358 aa  329  5.0000000000000004e-89  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  45.83 
 
 
378 aa  329  5.0000000000000004e-89  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  44.54 
 
 
356 aa  329  5.0000000000000004e-89  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  46.3 
 
 
381 aa  329  6e-89  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  47.27 
 
 
399 aa  328  9e-89  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  47.89 
 
 
378 aa  327  1.0000000000000001e-88  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  47.63 
 
 
372 aa  328  1.0000000000000001e-88  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  46.6 
 
 
373 aa  328  1.0000000000000001e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  45.14 
 
 
387 aa  327  2.0000000000000001e-88  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  46.46 
 
 
391 aa  326  4.0000000000000003e-88  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  43.88 
 
 
393 aa  326  4.0000000000000003e-88  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  48.28 
 
 
373 aa  326  5e-88  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  46.75 
 
 
380 aa  326  5e-88  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  47.97 
 
 
359 aa  326  5e-88  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  48.28 
 
 
373 aa  326  5e-88  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  46.81 
 
 
399 aa  326  5e-88  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  47.78 
 
 
373 aa  325  7e-88  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  46.58 
 
 
383 aa  325  7e-88  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  44.62 
 
 
371 aa  325  1e-87  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  46.34 
 
 
374 aa  324  1e-87  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  45.92 
 
 
380 aa  324  2e-87  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  46.61 
 
 
385 aa  323  2e-87  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  44.13 
 
 
440 aa  324  2e-87  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  45.05 
 
 
378 aa  324  2e-87  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  46.58 
 
 
381 aa  323  3e-87  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  45.83 
 
 
384 aa  323  3e-87  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  46.58 
 
 
381 aa  323  4e-87  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  45.31 
 
 
377 aa  323  4e-87  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  47.24 
 
 
386 aa  322  5e-87  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  45.19 
 
 
381 aa  322  5e-87  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  46.49 
 
 
380 aa  322  6e-87  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  46.49 
 
 
380 aa  322  6e-87  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  46.84 
 
 
378 aa  322  7e-87  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  46.38 
 
 
367 aa  322  7e-87  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  322  8e-87  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  322  8e-87  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  322  9.000000000000001e-87  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  322  9.000000000000001e-87  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  322  9.000000000000001e-87  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  46.32 
 
 
381 aa  322  9.000000000000001e-87  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  47 
 
 
380 aa  321  9.999999999999999e-87  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
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