| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1774 |
|---|
| Symbol | |
|---|
| ID | 4689857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1883634 |
|---|
| End bp | 1884815 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639834780 |
|---|
| Product | carbamoyl phosphate synthase small subunit |
|---|
| Protein accession | YP_982005 |
|---|
| Protein GI | 121604676 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0283036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTTTGT CTCTACAGGG AAATACCCCT CCCGCCATAC TGGCGCTCGC AGACGGCACG
GTCTTTATTG GCAATTCGAT TGGAGCGGCC GGCTCCACGA TCGGCGAGGT GGTGTTCAAC
ACCGCCATGA CCGGCTACCA GGAAATCCTC ACGGACCCGA GCTATTGCCA GCAGATCGTC
ACCCTCACGT ATCCCCACAT CGGCAACTAC GGCATCAATG CCGAAGACGT TGAAGCAGAA
AAAGTCCATG CAGCCGGCCT GATCATCAAG GATCTGCCGC TGATCGCGTC TAACTTTCGC
GCTTCCATGA CCTTGTCCGA GTACCTGGTC CGCGAAAACA TCGTGGCGAT TGCCGGGATT
GACACCCGCC AGCTGACGCG TCACCTGCGA ATTCACGGCG CCCAAAATGG CTGCATCCTG
GCCCTGGCGT CTGGCGCATC CGTGAGCCAG TCGGCCATCG ACCAGGCTGT CGCCACCGCC
AGACAGGCGC CCAGCATGGA CGGCCTGGAC CTGGCCAAGG TGGTCTCGAC AAAACAGCGT
TACGAATGGA GCCAGACCGA GTGGAAACTT GGATCGGGCT ACGGCGAGCA GGCAGCGCCC
AGATTCCATG TCGTCGCGTT TGACTTCGGC GTCAAGAAAA ACATCCTGCG CATGGTCGCC
GAGCGCGGCG CGCGCATCAC GGTGGTGCCG GCGCAAACTT CTGCGCTTGA CGTGCTCAAG
CTCAATCCCG ATGGCATTTT CCTGGCCAAC GGCCCGGGTG ATCCGCAGGC CTGCGACTAC
GCCATCGAGA CGGTTCGCGA ACTGATCGAA ACCGGCATTC CGACCTTCGG CATCTGCTTG
GGCCACCAGA TCATGGCGCT GGCCGGCGGG GCCAAGACCT TCAAGATGAA GTTCGGCCAC
CACGGCGCCA ACCATCCGGT CAAGGACATG GACACCGGCC GCGTCAGCAT CACCAGCCAG
AACCACGGTT TCGCGGTCGA TGAAACCACG CTGCCGGCGA ATCTGCGGCC GACGCACATC
AGCCTGTTCG ACGGCACGCT GCAGGGGCTG GCCCGCACCG ACAAGCCGGC GTTCTGCTTC
CAGGGCCATC CTGAAGCTTC GCCCGGACCC CACGATATTT CATATTTGTT CGATCGTTTC
ACGACCTTGA TGGAACAGGC TCAGGAGAAG AAGAATGCCT AA
|
|---|
| Protein sequence | MLLSLQGNTP PAILALADGT VFIGNSIGAA GSTIGEVVFN TAMTGYQEIL TDPSYCQQIV
TLTYPHIGNY GINAEDVEAE KVHAAGLIIK DLPLIASNFR ASMTLSEYLV RENIVAIAGI
DTRQLTRHLR IHGAQNGCIL ALASGASVSQ SAIDQAVATA RQAPSMDGLD LAKVVSTKQR
YEWSQTEWKL GSGYGEQAAP RFHVVAFDFG VKKNILRMVA ERGARITVVP AQTSALDVLK
LNPDGIFLAN GPGDPQACDY AIETVRELIE TGIPTFGICL GHQIMALAGG AKTFKMKFGH
HGANHPVKDM DTGRVSITSQ NHGFAVDETT LPANLRPTHI SLFDGTLQGL ARTDKPAFCF
QGHPEASPGP HDISYLFDRF TTLMEQAQEK KNA
|
|---|
| |