More than 300 homologs were found in PanDaTox collection
for query gene Cthe_0950 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  100 
 
 
357 aa  741    Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0615  carbamoyl-phosphate synthase, small subunit  72.07 
 
 
360 aa  539  9.999999999999999e-153  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1046  carbamoyl phosphate synthase small subunit  57.46 
 
 
364 aa  438  9.999999999999999e-123  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  56.86 
 
 
359 aa  440  9.999999999999999e-123  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_008261  CPF_2898  carbamoyl phosphate synthase small subunit  59.03 
 
 
349 aa  436  1e-121  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  57.22 
 
 
364 aa  432  1e-120  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_2577  carbamoyl phosphate synthase small subunit  58.45 
 
 
349 aa  432  1e-120  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  57.66 
 
 
359 aa  428  1e-119  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  57.34 
 
 
358 aa  424  1e-118  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_011898  Ccel_2913  carbamoyl-phosphate synthase, small subunit  57.34 
 
 
351 aa  416  9.999999999999999e-116  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  52.49 
 
 
361 aa  410  1e-113  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_2536  carbamoyl phosphate synthase small subunit  55.18 
 
 
373 aa  408  1e-113  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0261621  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3714  carbamoyl phosphate synthase small subunit  54.9 
 
 
365 aa  408  1e-113  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.971369  n/a   
 
 
-
 
NC_003909  BCE_3932  carbamoyl phosphate synthase small subunit  54.9 
 
 
365 aa  406  1.0000000000000001e-112  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3738  carbamoyl phosphate synthase small subunit  54.62 
 
 
365 aa  405  1.0000000000000001e-112  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3629  carbamoyl phosphate synthase small subunit  54.62 
 
 
365 aa  405  1.0000000000000001e-112  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3901  carbamoyl phosphate synthase small subunit  54.62 
 
 
365 aa  405  1.0000000000000001e-112  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000355158 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  53.23 
 
 
376 aa  405  1.0000000000000001e-112  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_011725  BCB4264_A3985  carbamoyl phosphate synthase small subunit  54.9 
 
 
365 aa  405  1.0000000000000001e-112  Bacillus cereus B4264  Bacteria  normal  0.289727  n/a   
 
 
-
 
NC_007530  GBAA_4026  carbamoyl phosphate synthase small subunit  54.62 
 
 
365 aa  405  1.0000000000000001e-112  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0667428  n/a   
 
 
-
 
NC_011658  BCAH187_A3936  carbamoyl phosphate synthase small subunit  54.9 
 
 
365 aa  406  1.0000000000000001e-112  Bacillus cereus AH187  Bacteria  normal  0.0146429  n/a   
 
 
-
 
NC_013517  Sterm_2670  carbamoyl-phosphate synthase, small subunit  54.24 
 
 
351 aa  405  1.0000000000000001e-112  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3203  carbamoyl-phosphate synthase, small subunit  53.44 
 
 
368 aa  402  1e-111  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3646  carbamoyl phosphate synthase small subunit  54.34 
 
 
365 aa  402  1e-111  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  55.93 
 
 
356 aa  402  1e-111  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0661  carbamoyl phosphate synthase small subunit  54.06 
 
 
356 aa  402  1e-111  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1256  carbamoyl phosphate synthase small subunit  54.62 
 
 
365 aa  404  1e-111  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1307  carbamoyl-phosphate synthase, small subunit  54.93 
 
 
368 aa  404  1e-111  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  52.1 
 
 
359 aa  399  9.999999999999999e-111  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_014150  Bmur_2483  carbamoyl-phosphate synthase, small subunit  54.39 
 
 
359 aa  397  1e-109  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.0000863462  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  51.22 
 
 
383 aa  389  1e-107  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  49.47 
 
 
389 aa  378  1e-104  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_002976  SERP0768  carbamoyl phosphate synthase small subunit  50.7 
 
 
366 aa  375  1e-103  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1208  carbamoyl-phosphate synthase small subunit  51.7 
 
 
361 aa  377  1e-103  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  unclonable  0.0000951644  n/a   
 
 
-
 
NC_008532  STER_0558  carbamoyl phosphate synthase small subunit  50.42 
 
 
362 aa  375  1e-103  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  50.66 
 
 
380 aa  373  1e-102  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_1709  carbamoyl phosphate synthase small subunit  49.58 
 
 
357 aa  372  1e-102  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  49.73 
 
 
377 aa  373  1e-102  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  50.27 
 
 
374 aa  369  1e-101  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_004116  SAG1043  carbamoyl phosphate synthase small subunit  48.88 
 
 
358 aa  370  1e-101  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  48.55 
 
 
384 aa  369  1e-101  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  52.14 
 
 
374 aa  369  1e-101  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  51.34 
 
 
384 aa  369  1e-101  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  49.73 
 
 
391 aa  370  1e-101  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  50 
 
 
379 aa  367  1e-100  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  51.34 
 
 
373 aa  368  1e-100  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  50.13 
 
 
388 aa  366  1e-100  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  49.21 
 
 
416 aa  365  1e-100  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  50.27 
 
 
374 aa  367  1e-100  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  52.14 
 
 
374 aa  368  1e-100  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1867  carbamoyl-phosphate synthase small subunit  52.41 
 
 
354 aa  366  1e-100  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  49.6 
 
 
379 aa  365  1e-100  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  49.19 
 
 
381 aa  365  1e-100  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  50.8 
 
 
381 aa  363  2e-99  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  51.21 
 
 
373 aa  362  4e-99  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  48.67 
 
 
379 aa  362  4e-99  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_009632  SaurJH1_1286  carbamoyl phosphate synthase small subunit  49.3 
 
 
366 aa  362  5.0000000000000005e-99  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.510283  n/a   
 
 
-
 
NC_009487  SaurJH9_1261  carbamoyl phosphate synthase small subunit  49.3 
 
 
366 aa  362  5.0000000000000005e-99  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  50.13 
 
 
380 aa  361  9e-99  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  50.13 
 
 
380 aa  361  9e-99  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  49.08 
 
 
383 aa  361  1e-98  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  50.4 
 
 
385 aa  360  1e-98  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  51.2 
 
 
373 aa  361  1e-98  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0951  carbamoyl-phosphate synthase, small subunit  52.51 
 
 
352 aa  359  3e-98  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.00000000113034  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  48.8 
 
 
385 aa  359  5e-98  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  48.38 
 
 
373 aa  358  7e-98  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  48.81 
 
 
390 aa  358  8e-98  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  49.73 
 
 
391 aa  358  8e-98  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  48.14 
 
 
382 aa  357  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_011899  Hore_02880  carbamoyl-phosphate synthase, small subunit  50.42 
 
 
364 aa  357  9.999999999999999e-98  Halothermothrix orenii H 168  Bacteria  normal  0.422195  n/a   
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  48.14 
 
 
391 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  48.52 
 
 
372 aa  357  1.9999999999999998e-97  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_00035  hypothetical protein  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_009513  Lreu_0086  carbamoyl phosphate synthase small subunit  47.88 
 
 
362 aa  357  1.9999999999999998e-97  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000481793  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  48.38 
 
 
373 aa  357  1.9999999999999998e-97  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  47.84 
 
 
373 aa  357  1.9999999999999998e-97  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  47.21 
 
 
391 aa  357  1.9999999999999998e-97  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  47.34 
 
 
382 aa  357  1.9999999999999998e-97  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  49.2 
 
 
396 aa  356  2.9999999999999997e-97  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  49.45 
 
 
369 aa  356  2.9999999999999997e-97  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  48.53 
 
 
387 aa  356  2.9999999999999997e-97  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  48.01 
 
 
386 aa  356  2.9999999999999997e-97  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  47.84 
 
 
373 aa  356  2.9999999999999997e-97  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  47.87 
 
 
382 aa  356  3.9999999999999996e-97  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  48.8 
 
 
382 aa  355  5e-97  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  47.34 
 
 
382 aa  355  6.999999999999999e-97  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  48.27 
 
 
378 aa  355  6.999999999999999e-97  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  47.38 
 
 
386 aa  354  1e-96  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  47.61 
 
 
382 aa  353  2e-96  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1371  carbamoyl-phosphate synthase, small subunit  47.12 
 
 
368 aa  353  2e-96  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  49.18 
 
 
369 aa  354  2e-96  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  47.76 
 
 
386 aa  354  2e-96  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  47.61 
 
 
382 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  47.75 
 
 
381 aa  353  2e-96  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  47.94 
 
 
392 aa  353  2.9999999999999997e-96  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
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