More than 300 homologs were found in PanDaTox collection
for query gene Rmar_2002 on replicon NC_013501
Organism: Rhodothermus marinus DSM 4252



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013501  Rmar_2002  carbamoyl-phosphate synthase, small subunit  100 
 
 
379 aa  785    Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4372  carbamoyl phosphate synthase small subunit  56.23 
 
 
368 aa  417  9.999999999999999e-116  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  55.37 
 
 
365 aa  395  1e-109  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  51.52 
 
 
371 aa  393  1e-108  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_013730  Slin_5758  carbamoyl-phosphate synthase, small subunit  54.08 
 
 
367 aa  390  1e-107  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  52.21 
 
 
369 aa  382  1e-105  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  52.43 
 
 
376 aa  381  1e-104  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_013061  Phep_0705  carbamoyl phosphate synthase small subunit  52.91 
 
 
370 aa  381  1e-104  Pedobacter heparinus DSM 2366  Bacteria  normal  0.274558  normal 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  52.38 
 
 
369 aa  380  1e-104  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  51.65 
 
 
366 aa  380  1e-104  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0275  carbamoyl phosphate synthase small subunit  54.67 
 
 
366 aa  375  1e-103  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.000180913  n/a   
 
 
-
 
NC_009441  Fjoh_0369  carbamoyl phosphate synthase small subunit  53.69 
 
 
372 aa  376  1e-103  Flavobacterium johnsoniae UW101  Bacteria  normal  0.528508  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  50 
 
 
367 aa  369  1e-101  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_05860  carbamoyl-phosphate synthase small subunit  49.86 
 
 
373 aa  369  1e-101  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.261865  n/a   
 
 
-
 
NC_013132  Cpin_1645  carbamoyl phosphate synthase small subunit  49.72 
 
 
369 aa  370  1e-101  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  50 
 
 
369 aa  371  1e-101  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  49.87 
 
 
391 aa  366  1e-100  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  50.14 
 
 
367 aa  365  1e-100  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  51.34 
 
 
386 aa  365  1e-99  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  51.08 
 
 
386 aa  358  9.999999999999999e-98  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  49.86 
 
 
383 aa  355  5e-97  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  50.4 
 
 
374 aa  353  2e-96  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  50.29 
 
 
358 aa  353  2.9999999999999997e-96  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  47.98 
 
 
374 aa  352  5e-96  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  48.23 
 
 
377 aa  352  7e-96  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  50.43 
 
 
359 aa  350  2e-95  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  50.28 
 
 
361 aa  350  2e-95  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  47.44 
 
 
374 aa  350  3e-95  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  47.71 
 
 
374 aa  348  7e-95  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  47.71 
 
 
373 aa  348  1e-94  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  48.25 
 
 
374 aa  347  2e-94  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  48.79 
 
 
373 aa  347  2e-94  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  48.08 
 
 
373 aa  347  3e-94  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  49.06 
 
 
373 aa  346  4e-94  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  49.19 
 
 
372 aa  346  4e-94  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  47.71 
 
 
381 aa  345  5e-94  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  47.96 
 
 
394 aa  345  7e-94  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  47.58 
 
 
398 aa  344  1e-93  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  48.79 
 
 
373 aa  344  1e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  46.51 
 
 
379 aa  344  2e-93  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  47.07 
 
 
380 aa  344  2e-93  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  342  5.999999999999999e-93  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  47.85 
 
 
380 aa  342  7e-93  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  46.58 
 
 
397 aa  342  8e-93  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  47.61 
 
 
381 aa  342  8e-93  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  341  1e-92  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  341  1e-92  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  341  1e-92  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  46.81 
 
 
380 aa  341  1e-92  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  341  1e-92  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  341  2e-92  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  47.34 
 
 
381 aa  341  2e-92  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_1152  carbamoyl phosphate synthase small subunit  47.73 
 
 
386 aa  339  5e-92  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  46.54 
 
 
380 aa  338  7e-92  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  46.54 
 
 
380 aa  338  7e-92  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  47.44 
 
 
373 aa  338  7e-92  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  47.81 
 
 
372 aa  338  9.999999999999999e-92  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  45.9 
 
 
391 aa  338  9.999999999999999e-92  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  46.61 
 
 
376 aa  337  1.9999999999999998e-91  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  47.81 
 
 
393 aa  337  1.9999999999999998e-91  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  44.53 
 
 
380 aa  337  2.9999999999999997e-91  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  47.62 
 
 
388 aa  336  2.9999999999999997e-91  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  44.53 
 
 
380 aa  337  2.9999999999999997e-91  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_2060  carbamoyl phosphate synthase small subunit  48.1 
 
 
394 aa  337  2.9999999999999997e-91  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.745912 
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  47.06 
 
 
381 aa  337  2.9999999999999997e-91  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  47.06 
 
 
380 aa  336  2.9999999999999997e-91  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  47.31 
 
 
384 aa  335  5e-91  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  48.73 
 
 
359 aa  335  5.999999999999999e-91  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  45.5 
 
 
384 aa  335  7e-91  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.28 
 
 
359 aa  334  1e-90  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  46.76 
 
 
390 aa  335  1e-90  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  46.54 
 
 
380 aa  333  2e-90  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  48.29 
 
 
392 aa  334  2e-90  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  46.61 
 
 
378 aa  333  3e-90  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  46.24 
 
 
393 aa  333  3e-90  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  50 
 
 
377 aa  333  4e-90  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  44.1 
 
 
389 aa  332  5e-90  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_007513  Syncc9902_1307  carbamoyl phosphate synthase small subunit  46.52 
 
 
398 aa  332  5e-90  Synechococcus sp. CC9902  Bacteria  normal  0.786161  n/a   
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  47.83 
 
 
416 aa  332  7.000000000000001e-90  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  47.23 
 
 
389 aa  332  7.000000000000001e-90  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  45.14 
 
 
440 aa  332  9e-90  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  45.6 
 
 
399 aa  331  1e-89  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  46.8 
 
 
390 aa  331  1e-89  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  49.01 
 
 
364 aa  332  1e-89  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  45.48 
 
 
378 aa  331  1e-89  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  46.8 
 
 
390 aa  331  1e-89  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  46.36 
 
 
373 aa  330  2e-89  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  46.65 
 
 
378 aa  330  3e-89  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  45.21 
 
 
378 aa  330  3e-89  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  44.9 
 
 
392 aa  330  3e-89  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  46.32 
 
 
391 aa  330  3e-89  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  44.9 
 
 
392 aa  330  3e-89  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  46.11 
 
 
392 aa  329  4e-89  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  44.68 
 
 
387 aa  329  4e-89  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  43.86 
 
 
388 aa  329  5.0000000000000004e-89  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  47.52 
 
 
389 aa  329  5.0000000000000004e-89  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  47.07 
 
 
378 aa  329  5.0000000000000004e-89  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  44.95 
 
 
378 aa  328  7e-89  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  46.54 
 
 
378 aa  328  7e-89  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  45.91 
 
 
381 aa  328  1.0000000000000001e-88  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
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