More than 300 homologs were found in PanDaTox collection
for query gene Swit_0435 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  100 
 
 
392 aa  803    Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  69.21 
 
 
389 aa  537  1e-151  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1470  carbamoyl phosphate synthase small subunit  65.45 
 
 
397 aa  524  1e-147  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4142  carbamoyl phosphate synthase small subunit  65.19 
 
 
397 aa  520  1e-146  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.164526  normal 
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  64.68 
 
 
402 aa  515  1.0000000000000001e-145  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_007964  Nham_2871  carbamoyl phosphate synthase small subunit  61.83 
 
 
396 aa  515  1.0000000000000001e-145  Nitrobacter hamburgensis X14  Bacteria  normal  0.393325  n/a   
 
 
-
 
NC_007925  RPC_0960  carbamoyl phosphate synthase small subunit  62.78 
 
 
396 aa  513  1e-144  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0203745 
 
 
-
 
NC_007958  RPD_3986  carbamoyl phosphate synthase small subunit  64.68 
 
 
397 aa  514  1e-144  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6791  carbamoyl phosphate synthase small subunit  62.85 
 
 
398 aa  514  1e-144  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0374748 
 
 
-
 
NC_007406  Nwi_2446  carbamoyl phosphate synthase small subunit  61.58 
 
 
396 aa  509  1e-143  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.505949  normal  0.289169 
 
 
-
 
NC_008254  Meso_2083  carbamoyl phosphate synthase small subunit  64.3 
 
 
399 aa  510  1e-143  Chelativorans sp. BNC1  Bacteria  normal  0.321442  n/a   
 
 
-
 
NC_009720  Xaut_1243  carbamoyl phosphate synthase small subunit  61.88 
 
 
411 aa  504  1e-141  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3111  carbamoyl phosphate synthase small subunit  62.99 
 
 
406 aa  501  1e-141  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  64.91 
 
 
405 aa  497  1e-139  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.295908 
 
 
-
 
NC_009667  Oant_1683  carbamoyl phosphate synthase small subunit  62.14 
 
 
407 aa  496  1e-139  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  64.38 
 
 
405 aa  493  9.999999999999999e-139  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_008044  TM1040_2294  carbamoyl phosphate synthase small subunit  63.4 
 
 
386 aa  493  9.999999999999999e-139  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0983  carbamoyl phosphate synthase small subunit  63.41 
 
 
423 aa  494  9.999999999999999e-139  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.2906  normal 
 
 
-
 
NC_009049  Rsph17029_0524  carbamoyl phosphate synthase small subunit  63.56 
 
 
387 aa  489  1e-137  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29904  normal 
 
 
-
 
NC_011369  Rleg2_2706  carbamoyl phosphate synthase small subunit  61.1 
 
 
403 aa  489  1e-137  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2229  carbamoyl phosphate synthase small subunit  61.05 
 
 
401 aa  488  1e-137  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0661  carbamoyl phosphate synthase small subunit  63.03 
 
 
387 aa  489  1e-137  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.693727  normal  0.143114 
 
 
-
 
NC_007794  Saro_2231  carbamoyl phosphate synthase small subunit  65.47 
 
 
391 aa  488  1e-137  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.961008  n/a   
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  62.77 
 
 
384 aa  489  1e-137  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal 
 
 
-
 
NC_004310  BR1483  carbamoyl phosphate synthase small subunit  61.84 
 
 
407 aa  486  1e-136  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1439  carbamoyl phosphate synthase small subunit  61.84 
 
 
407 aa  486  1e-136  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2965  carbamoyl phosphate synthase small subunit  60.31 
 
 
403 aa  484  1e-135  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0448128 
 
 
-
 
NC_009484  Acry_0912  carbamoyl phosphate synthase small subunit  61.68 
 
 
447 aa  484  1e-135  Acidiphilium cryptum JF-5  Bacteria  normal  0.203932  n/a   
 
 
-
 
NC_010505  Mrad2831_0570  carbamoyl-phosphate synthase, small subunit  64.14 
 
 
410 aa  480  1e-134  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.308304 
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  61.52 
 
 
467 aa  479  1e-134  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_011666  Msil_1622  carbamoyl-phosphate synthase, small subunit  61.94 
 
 
398 aa  480  1e-134  Methylocella silvestris BL2  Bacteria  n/a    decreased coverage  0.0014107 
 
 
-
 
NC_009952  Dshi_2387  carbamoyl phosphate synthase small subunit  61.83 
 
 
389 aa  477  1e-133  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0953377  normal  0.858607 
 
 
-
 
NC_008686  Pden_2165  carbamoyl phosphate synthase small subunit  60.79 
 
 
382 aa  475  1e-133  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1874  carbamoyl phosphate synthase small subunit  61.97 
 
 
387 aa  474  1e-132  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_010172  Mext_0615  carbamoyl-phosphate synthase, small subunit  62.96 
 
 
416 aa  468  1.0000000000000001e-131  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.156891 
 
 
-
 
NC_011757  Mchl_0626  carbamoyl-phosphate synthase, small subunit  62.96 
 
 
416 aa  468  9.999999999999999e-131  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.265795 
 
 
-
 
NC_010338  Caul_1037  carbamoyl phosphate synthase small subunit  61.62 
 
 
388 aa  467  9.999999999999999e-131  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0591  carbamoyl-phosphate synthase, small subunit  62.7 
 
 
416 aa  466  9.999999999999999e-131  Methylobacterium populi BJ001  Bacteria  normal  0.88824  normal  0.101077 
 
 
-
 
NC_008783  BARBAKC583_0972  carbamoyl phosphate synthase small subunit  58.87 
 
 
399 aa  463  1e-129  Bartonella bacilliformis KC583  Bacteria  normal  0.0520373  n/a   
 
 
-
 
NC_010581  Bind_3531  carbamoyl-phosphate synthase, small subunit  59.49 
 
 
421 aa  461  9.999999999999999e-129  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.56559  normal 
 
 
-
 
NC_008347  Mmar10_2132  carbamoyl-phosphate synthase small subunit  57.78 
 
 
390 aa  442  1e-123  Maricaulis maris MCS10  Bacteria  normal  normal  0.172352 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  56.28 
 
 
378 aa  419  1e-116  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  56.02 
 
 
378 aa  419  1e-116  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  56.23 
 
 
381 aa  419  1e-116  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  56.58 
 
 
384 aa  412  1e-114  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  55.41 
 
 
381 aa  411  1e-114  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  55.2 
 
 
391 aa  411  1e-113  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  56.2 
 
 
380 aa  409  1e-113  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  53.97 
 
 
384 aa  410  1e-113  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  55.41 
 
 
380 aa  410  1e-113  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  54.88 
 
 
381 aa  409  1e-113  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  54.93 
 
 
382 aa  409  1e-113  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  54.93 
 
 
382 aa  409  1e-113  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  54.88 
 
 
381 aa  409  1e-113  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  55.2 
 
 
382 aa  411  1e-113  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  53.65 
 
 
393 aa  411  1e-113  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  54.88 
 
 
380 aa  405  1.0000000000000001e-112  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  54.05 
 
 
378 aa  408  1.0000000000000001e-112  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  54.62 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  54.67 
 
 
381 aa  405  1.0000000000000001e-112  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  54.62 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  54.62 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  54.62 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  56.05 
 
 
391 aa  407  1.0000000000000001e-112  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  54.93 
 
 
382 aa  408  1.0000000000000001e-112  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  54.88 
 
 
380 aa  405  1.0000000000000001e-112  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  54.62 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  54.88 
 
 
380 aa  405  1.0000000000000001e-112  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  56.23 
 
 
384 aa  406  1.0000000000000001e-112  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  52.93 
 
 
389 aa  402  1e-111  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  55.73 
 
 
379 aa  404  1e-111  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  54.47 
 
 
416 aa  404  1e-111  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  54.38 
 
 
379 aa  403  1e-111  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  52.76 
 
 
401 aa  402  1e-111  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  53.56 
 
 
381 aa  403  1e-111  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  54.81 
 
 
378 aa  404  1e-111  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  53.6 
 
 
440 aa  400  9.999999999999999e-111  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  55.41 
 
 
381 aa  401  9.999999999999999e-111  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  55.08 
 
 
385 aa  399  9.999999999999999e-111  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  53.95 
 
 
378 aa  400  9.999999999999999e-111  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  52.22 
 
 
383 aa  400  9.999999999999999e-111  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  55.41 
 
 
380 aa  401  9.999999999999999e-111  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  55.88 
 
 
380 aa  400  9.999999999999999e-111  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  53.78 
 
 
383 aa  397  1e-109  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.00672288 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  53.87 
 
 
385 aa  396  1e-109  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  53.6 
 
 
391 aa  397  1e-109  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  54.21 
 
 
386 aa  397  1e-109  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  53.19 
 
 
392 aa  397  1e-109  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  54.4 
 
 
378 aa  397  1e-109  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  54.26 
 
 
386 aa  395  1e-109  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  52.6 
 
 
382 aa  395  1e-109  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  54.13 
 
 
379 aa  395  1e-109  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  54.99 
 
 
381 aa  397  1e-109  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  54.13 
 
 
390 aa  395  1e-109  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  54.79 
 
 
386 aa  395  1e-109  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  54.4 
 
 
386 aa  395  1e-109  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  53.87 
 
 
381 aa  397  1e-109  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  53.87 
 
 
378 aa  395  1e-109  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  54.21 
 
 
381 aa  398  1e-109  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  52.79 
 
 
381 aa  395  1e-109  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
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