More than 300 homologs were found in PanDaTox collection
for query gene Lcho_2823 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  100 
 
 
394 aa  812    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  78.41 
 
 
401 aa  650    Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  77.63 
 
 
393 aa  637    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  82.21 
 
 
383 aa  622  1e-177  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.00672288 
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  78.74 
 
 
389 aa  620  1e-176  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  76.73 
 
 
392 aa  612  9.999999999999999e-175  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_007908  Rfer_2004  carbamoyl phosphate synthase small subunit  77.12 
 
 
393 aa  608  1e-173  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  76.49 
 
 
390 aa  603  1.0000000000000001e-171  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  76.49 
 
 
390 aa  603  1.0000000000000001e-171  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  75.9 
 
 
388 aa  597  1e-169  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  74.68 
 
 
378 aa  582  1.0000000000000001e-165  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1148  carbamoyl-phosphate synthase, small subunit  72.85 
 
 
387 aa  581  1.0000000000000001e-165  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0863472  normal 
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  71.83 
 
 
381 aa  575  1.0000000000000001e-163  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  72.08 
 
 
381 aa  576  1.0000000000000001e-163  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  71.79 
 
 
378 aa  572  1.0000000000000001e-162  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  71.57 
 
 
381 aa  573  1.0000000000000001e-162  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  71.57 
 
 
381 aa  573  1.0000000000000001e-162  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  71.57 
 
 
381 aa  574  1.0000000000000001e-162  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  73.51 
 
 
378 aa  573  1.0000000000000001e-162  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  71.57 
 
 
381 aa  573  1.0000000000000001e-162  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  71.57 
 
 
381 aa  573  1.0000000000000001e-162  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  73.25 
 
 
378 aa  574  1.0000000000000001e-162  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  73.6 
 
 
382 aa  574  1.0000000000000001e-162  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  71.57 
 
 
381 aa  573  1.0000000000000001e-162  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  70.1 
 
 
397 aa  569  1e-161  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  72.34 
 
 
384 aa  569  1e-161  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  70.99 
 
 
380 aa  570  1e-161  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  71.83 
 
 
381 aa  565  1e-160  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  71.57 
 
 
391 aa  565  1e-160  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  68.59 
 
 
398 aa  567  1e-160  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  70.74 
 
 
380 aa  564  1e-160  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  70.74 
 
 
380 aa  564  1e-160  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  70.48 
 
 
380 aa  562  1.0000000000000001e-159  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  71.5 
 
 
380 aa  562  1.0000000000000001e-159  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  71.5 
 
 
380 aa  560  1e-158  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  69.17 
 
 
385 aa  557  1e-157  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  70.81 
 
 
384 aa  557  1e-157  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  70.23 
 
 
379 aa  548  1e-155  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  66.15 
 
 
376 aa  536  1e-151  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  66.07 
 
 
379 aa  528  1e-149  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  67.79 
 
 
380 aa  531  1e-149  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  65.44 
 
 
381 aa  523  1e-147  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  65.8 
 
 
382 aa  518  1e-146  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  67.02 
 
 
378 aa  518  1e-146  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  63.36 
 
 
383 aa  516  1.0000000000000001e-145  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  64.58 
 
 
416 aa  515  1.0000000000000001e-145  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  65.26 
 
 
378 aa  517  1.0000000000000001e-145  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  64.74 
 
 
384 aa  511  1e-144  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  64.75 
 
 
382 aa  509  1e-143  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  63.45 
 
 
440 aa  511  1e-143  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  65.71 
 
 
378 aa  509  1e-143  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  65.03 
 
 
393 aa  508  1e-143  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  64.49 
 
 
391 aa  509  1e-143  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  64.49 
 
 
382 aa  508  1e-143  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  64.06 
 
 
379 aa  508  1e-143  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  65.97 
 
 
378 aa  510  1e-143  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  63.76 
 
 
381 aa  508  1e-143  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  64.49 
 
 
382 aa  508  1e-143  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  65.26 
 
 
379 aa  507  9.999999999999999e-143  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  65.45 
 
 
386 aa  506  9.999999999999999e-143  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  64.4 
 
 
378 aa  504  9.999999999999999e-143  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  64.06 
 
 
387 aa  506  9.999999999999999e-143  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  64.06 
 
 
381 aa  506  9.999999999999999e-143  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  64.49 
 
 
382 aa  506  9.999999999999999e-143  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  63.76 
 
 
386 aa  502  1e-141  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  63.8 
 
 
396 aa  503  1e-141  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  63.9 
 
 
391 aa  501  1e-141  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  63.05 
 
 
381 aa  503  1e-141  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  63.9 
 
 
382 aa  501  1e-140  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  63.9 
 
 
382 aa  501  1e-140  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  64.4 
 
 
378 aa  498  1e-140  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  64.4 
 
 
378 aa  498  1e-140  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  63.9 
 
 
382 aa  501  1e-140  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  63.9 
 
 
382 aa  501  1e-140  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  64.4 
 
 
386 aa  498  1e-140  Pseudomonas putida F1  Bacteria  normal  normal  0.740896 
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  63.9 
 
 
382 aa  501  1e-140  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  63.9 
 
 
382 aa  499  1e-140  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  63.45 
 
 
382 aa  500  1e-140  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_00035  hypothetical protein  63.9 
 
 
382 aa  501  1e-140  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  64.12 
 
 
381 aa  498  1e-140  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  63.9 
 
 
382 aa  501  1e-140  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  63.23 
 
 
385 aa  500  1e-140  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  63.87 
 
 
386 aa  495  1e-139  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  61.9 
 
 
383 aa  496  1e-139  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  64.4 
 
 
378 aa  495  1e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  63.97 
 
 
382 aa  495  1e-139  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  62.47 
 
 
381 aa  497  1e-139  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  62.53 
 
 
381 aa  496  1e-139  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  63.42 
 
 
386 aa  495  1e-139  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  63.35 
 
 
378 aa  493  9.999999999999999e-139  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_009708  YpsIP31758_3454  carbamoyl phosphate synthase small subunit  63.87 
 
 
391 aa  493  9.999999999999999e-139  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  62.69 
 
 
390 aa  493  9.999999999999999e-139  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_010159  YpAngola_A0784  carbamoyl phosphate synthase small subunit  63.87 
 
 
391 aa  492  9.999999999999999e-139  Yersinia pestis Angola  Bacteria  normal  0.594963  normal  0.491126 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  62.76 
 
 
382 aa  492  9.999999999999999e-139  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  62.63 
 
 
386 aa  494  9.999999999999999e-139  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  63.42 
 
 
390 aa  493  9.999999999999999e-139  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  64.21 
 
 
386 aa  493  9.999999999999999e-139  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_010465  YPK_3583  carbamoyl phosphate synthase small subunit  63.61 
 
 
391 aa  491  1e-137  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  63.42 
 
 
391 aa  488  1e-137  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  63.42 
 
 
386 aa  489  1e-137  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
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