More than 300 homologs were found in PanDaTox collection
for query gene Plav_2314 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  100 
 
 
402 aa  832    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_011004  Rpal_1470  carbamoyl phosphate synthase small subunit  69.64 
 
 
397 aa  574  1.0000000000000001e-163  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2083  carbamoyl phosphate synthase small subunit  69.82 
 
 
399 aa  576  1.0000000000000001e-163  Chelativorans sp. BNC1  Bacteria  normal  0.321442  n/a   
 
 
-
 
NC_007778  RPB_4142  carbamoyl phosphate synthase small subunit  69.64 
 
 
397 aa  572  1.0000000000000001e-162  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.164526  normal 
 
 
-
 
NC_007958  RPD_3986  carbamoyl phosphate synthase small subunit  69.64 
 
 
397 aa  572  1.0000000000000001e-162  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6791  carbamoyl phosphate synthase small subunit  70.26 
 
 
398 aa  568  1e-161  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0374748 
 
 
-
 
NC_007925  RPC_0960  carbamoyl phosphate synthase small subunit  70.3 
 
 
396 aa  570  1e-161  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0203745 
 
 
-
 
NC_007964  Nham_2871  carbamoyl phosphate synthase small subunit  70.53 
 
 
396 aa  568  1e-161  Nitrobacter hamburgensis X14  Bacteria  normal  0.393325  n/a   
 
 
-
 
NC_007406  Nwi_2446  carbamoyl phosphate synthase small subunit  70 
 
 
396 aa  563  1.0000000000000001e-159  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.505949  normal  0.289169 
 
 
-
 
NC_009720  Xaut_1243  carbamoyl phosphate synthase small subunit  69.47 
 
 
411 aa  559  1e-158  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2229  carbamoyl phosphate synthase small subunit  67.6 
 
 
401 aa  555  1e-157  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3111  carbamoyl phosphate synthase small subunit  66.58 
 
 
406 aa  552  1e-156  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2706  carbamoyl phosphate synthase small subunit  67.43 
 
 
403 aa  549  1e-155  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1683  carbamoyl phosphate synthase small subunit  67.61 
 
 
407 aa  549  1e-155  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2965  carbamoyl phosphate synthase small subunit  66.92 
 
 
403 aa  546  1e-154  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0448128 
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  68.62 
 
 
405 aa  543  1e-153  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.295908 
 
 
-
 
NC_009505  BOV_1439  carbamoyl phosphate synthase small subunit  66.84 
 
 
407 aa  541  1e-153  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  69.9 
 
 
405 aa  544  1e-153  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_004310  BR1483  carbamoyl phosphate synthase small subunit  66.58 
 
 
407 aa  540  9.999999999999999e-153  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0524  carbamoyl phosphate synthase small subunit  66.67 
 
 
387 aa  527  1e-148  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29904  normal 
 
 
-
 
NC_011666  Msil_1622  carbamoyl-phosphate synthase, small subunit  65.03 
 
 
398 aa  525  1e-148  Methylocella silvestris BL2  Bacteria  n/a    decreased coverage  0.0014107 
 
 
-
 
NC_009428  Rsph17025_0661  carbamoyl phosphate synthase small subunit  65.88 
 
 
387 aa  521  1e-147  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.693727  normal  0.143114 
 
 
-
 
NC_010172  Mext_0615  carbamoyl-phosphate synthase, small subunit  68.59 
 
 
416 aa  518  1e-146  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.156891 
 
 
-
 
NC_011757  Mchl_0626  carbamoyl-phosphate synthase, small subunit  68.59 
 
 
416 aa  518  1e-146  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.265795 
 
 
-
 
NC_010725  Mpop_0591  carbamoyl-phosphate synthase, small subunit  68.85 
 
 
416 aa  520  1e-146  Methylobacterium populi BJ001  Bacteria  normal  0.88824  normal  0.101077 
 
 
-
 
NC_010338  Caul_1037  carbamoyl phosphate synthase small subunit  64.91 
 
 
388 aa  514  1.0000000000000001e-145  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3531  carbamoyl-phosphate synthase, small subunit  63 
 
 
421 aa  517  1.0000000000000001e-145  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.56559  normal 
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  64.68 
 
 
392 aa  515  1.0000000000000001e-145  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  65.16 
 
 
389 aa  514  1.0000000000000001e-145  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0972  carbamoyl phosphate synthase small subunit  63.9 
 
 
399 aa  513  1e-144  Bartonella bacilliformis KC583  Bacteria  normal  0.0520373  n/a   
 
 
-
 
NC_010505  Mrad2831_0570  carbamoyl-phosphate synthase, small subunit  67.98 
 
 
410 aa  513  1e-144  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.308304 
 
 
-
 
NC_008044  TM1040_2294  carbamoyl phosphate synthase small subunit  63.73 
 
 
386 aa  511  1e-144  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2387  carbamoyl phosphate synthase small subunit  65.33 
 
 
389 aa  508  1e-143  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0953377  normal  0.858607 
 
 
-
 
NC_007493  RSP_1874  carbamoyl phosphate synthase small subunit  65.09 
 
 
387 aa  508  1e-143  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  63.06 
 
 
384 aa  502  1e-141  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal 
 
 
-
 
NC_008686  Pden_2165  carbamoyl phosphate synthase small subunit  62.8 
 
 
382 aa  496  1e-139  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  60.15 
 
 
467 aa  479  1e-134  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_009484  Acry_0912  carbamoyl phosphate synthase small subunit  59.74 
 
 
447 aa  459  9.999999999999999e-129  Acidiphilium cryptum JF-5  Bacteria  normal  0.203932  n/a   
 
 
-
 
NC_007794  Saro_2231  carbamoyl phosphate synthase small subunit  62.13 
 
 
391 aa  452  1.0000000000000001e-126  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.961008  n/a   
 
 
-
 
NC_008048  Sala_0983  carbamoyl phosphate synthase small subunit  55.34 
 
 
423 aa  440  9.999999999999999e-123  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.2906  normal 
 
 
-
 
NC_008347  Mmar10_2132  carbamoyl-phosphate synthase small subunit  57.99 
 
 
390 aa  432  1e-120  Maricaulis maris MCS10  Bacteria  normal  normal  0.172352 
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  56.17 
 
 
380 aa  422  1e-117  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  55.15 
 
 
440 aa  420  1e-116  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  54.92 
 
 
385 aa  420  1e-116  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  54.59 
 
 
381 aa  413  1e-114  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  52.65 
 
 
381 aa  410  1e-113  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  52.65 
 
 
381 aa  410  1e-113  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  52.91 
 
 
381 aa  411  1e-113  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  52.65 
 
 
381 aa  410  1e-113  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  52.65 
 
 
381 aa  409  1e-113  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  52.91 
 
 
381 aa  410  1e-113  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  52.65 
 
 
381 aa  410  1e-113  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  54.97 
 
 
378 aa  405  1.0000000000000001e-112  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  52.33 
 
 
386 aa  405  1.0000000000000001e-112  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  52.65 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  53.93 
 
 
381 aa  408  1.0000000000000001e-112  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  54.45 
 
 
381 aa  406  1.0000000000000001e-112  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  53.81 
 
 
382 aa  402  1e-111  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  53.81 
 
 
382 aa  402  1e-111  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  52.97 
 
 
384 aa  403  1e-111  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  52.33 
 
 
386 aa  402  1e-111  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  53.42 
 
 
378 aa  401  1e-111  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  53.11 
 
 
391 aa  402  1e-111  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  53.65 
 
 
388 aa  404  1e-111  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  53.81 
 
 
382 aa  402  1e-111  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  52.85 
 
 
386 aa  402  1e-111  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_011663  Sbal223_1051  carbamoyl phosphate synthase small subunit  53.54 
 
 
387 aa  402  1e-111  Shewanella baltica OS223  Bacteria  normal  0.098868  hitchhiker  0.0000017806 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  53.17 
 
 
380 aa  402  1e-111  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  54.45 
 
 
390 aa  403  1e-111  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  53.54 
 
 
381 aa  402  1e-111  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  54.88 
 
 
387 aa  402  1e-111  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  53.81 
 
 
382 aa  402  1e-111  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  54.38 
 
 
391 aa  403  1e-111  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  53.66 
 
 
381 aa  403  1e-111  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  53.81 
 
 
382 aa  402  1e-111  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  52.97 
 
 
386 aa  404  1e-111  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  53.81 
 
 
382 aa  402  1e-111  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  53.02 
 
 
393 aa  404  1e-111  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_012892  B21_00035  hypothetical protein  53.81 
 
 
382 aa  402  1e-111  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  53.81 
 
 
391 aa  402  1e-111  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  52.89 
 
 
378 aa  399  9.999999999999999e-111  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  53.3 
 
 
384 aa  399  9.999999999999999e-111  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  53.66 
 
 
416 aa  401  9.999999999999999e-111  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  54.76 
 
 
385 aa  399  9.999999999999999e-111  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  53.66 
 
 
382 aa  399  9.999999999999999e-111  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  52.91 
 
 
380 aa  399  9.999999999999999e-111  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  52.38 
 
 
383 aa  399  9.999999999999999e-111  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  52.77 
 
 
381 aa  399  9.999999999999999e-111  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  54.23 
 
 
384 aa  399  9.999999999999999e-111  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  53.66 
 
 
391 aa  399  9.999999999999999e-111  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  53.68 
 
 
381 aa  400  9.999999999999999e-111  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  52.2 
 
 
386 aa  399  9.999999999999999e-111  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  52.45 
 
 
386 aa  400  9.999999999999999e-111  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  52.79 
 
 
390 aa  401  9.999999999999999e-111  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  50.65 
 
 
393 aa  399  9.999999999999999e-111  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  53.83 
 
 
379 aa  399  9.999999999999999e-111  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  52.45 
 
 
386 aa  401  9.999999999999999e-111  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  53.81 
 
 
382 aa  400  9.999999999999999e-111  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  53.42 
 
 
378 aa  401  9.999999999999999e-111  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  53.4 
 
 
376 aa  397  1e-109  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
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