More than 300 homologs were found in PanDaTox collection
for query gene RPC_0960 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009720  Xaut_1243  carbamoyl phosphate synthase small subunit  76.35 
 
 
411 aa  634    Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1470  carbamoyl phosphate synthase small subunit  92.17 
 
 
397 aa  765    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2446  carbamoyl phosphate synthase small subunit  84.34 
 
 
396 aa  711    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.505949  normal  0.289169 
 
 
-
 
NC_007778  RPB_4142  carbamoyl phosphate synthase small subunit  91.67 
 
 
397 aa  762    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.164526  normal 
 
 
-
 
NC_007925  RPC_0960  carbamoyl phosphate synthase small subunit  100 
 
 
396 aa  819    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0203745 
 
 
-
 
NC_007958  RPD_3986  carbamoyl phosphate synthase small subunit  91.92 
 
 
397 aa  763    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2871  carbamoyl phosphate synthase small subunit  85.1 
 
 
396 aa  717    Nitrobacter hamburgensis X14  Bacteria  normal  0.393325  n/a   
 
 
-
 
NC_009485  BBta_6791  carbamoyl phosphate synthase small subunit  87.37 
 
 
398 aa  730    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0374748 
 
 
-
 
NC_008254  Meso_2083  carbamoyl phosphate synthase small subunit  70.91 
 
 
399 aa  589  1e-167  Chelativorans sp. BNC1  Bacteria  normal  0.321442  n/a   
 
 
-
 
NC_011666  Msil_1622  carbamoyl-phosphate synthase, small subunit  71.06 
 
 
398 aa  582  1.0000000000000001e-165  Methylocella silvestris BL2  Bacteria  n/a    decreased coverage  0.0014107 
 
 
-
 
NC_011989  Avi_3111  carbamoyl phosphate synthase small subunit  69.33 
 
 
406 aa  576  1.0000000000000001e-163  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2706  carbamoyl phosphate synthase small subunit  69.77 
 
 
403 aa  575  1.0000000000000001e-163  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2229  carbamoyl phosphate synthase small subunit  68.94 
 
 
401 aa  577  1.0000000000000001e-163  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  70.3 
 
 
402 aa  570  1e-161  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  68.7 
 
 
405 aa  571  1e-161  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.295908 
 
 
-
 
NC_012850  Rleg_2965  carbamoyl phosphate synthase small subunit  69.51 
 
 
403 aa  570  1e-161  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0448128 
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  69.17 
 
 
405 aa  566  1e-160  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_009667  Oant_1683  carbamoyl phosphate synthase small subunit  66.84 
 
 
407 aa  550  1e-155  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1483  carbamoyl phosphate synthase small subunit  67.53 
 
 
407 aa  546  1e-154  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1439  carbamoyl phosphate synthase small subunit  67.53 
 
 
407 aa  547  1e-154  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0591  carbamoyl-phosphate synthase, small subunit  68.29 
 
 
416 aa  545  1e-154  Methylobacterium populi BJ001  Bacteria  normal  0.88824  normal  0.101077 
 
 
-
 
NC_010172  Mext_0615  carbamoyl-phosphate synthase, small subunit  68.56 
 
 
416 aa  546  1e-154  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.156891 
 
 
-
 
NC_011757  Mchl_0626  carbamoyl-phosphate synthase, small subunit  68.56 
 
 
416 aa  546  1e-154  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.265795 
 
 
-
 
NC_010505  Mrad2831_0570  carbamoyl-phosphate synthase, small subunit  67.97 
 
 
410 aa  538  9.999999999999999e-153  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.308304 
 
 
-
 
NC_008783  BARBAKC583_0972  carbamoyl phosphate synthase small subunit  65.88 
 
 
399 aa  532  1e-150  Bartonella bacilliformis KC583  Bacteria  normal  0.0520373  n/a   
 
 
-
 
NC_010581  Bind_3531  carbamoyl-phosphate synthase, small subunit  64.63 
 
 
421 aa  522  1e-147  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.56559  normal 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  64.52 
 
 
389 aa  516  1.0000000000000001e-145  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  62.78 
 
 
392 aa  513  1e-144  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal 
 
 
-
 
NC_010338  Caul_1037  carbamoyl phosphate synthase small subunit  64.12 
 
 
388 aa  505  9.999999999999999e-143  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0524  carbamoyl phosphate synthase small subunit  63.2 
 
 
387 aa  494  1e-139  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29904  normal 
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  62.57 
 
 
384 aa  496  1e-139  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal 
 
 
-
 
NC_008044  TM1040_2294  carbamoyl phosphate synthase small subunit  62.4 
 
 
386 aa  495  1e-139  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0661  carbamoyl phosphate synthase small subunit  62.77 
 
 
387 aa  494  9.999999999999999e-139  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.693727  normal  0.143114 
 
 
-
 
NC_009952  Dshi_2387  carbamoyl phosphate synthase small subunit  63.4 
 
 
389 aa  483  1e-135  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0953377  normal  0.858607 
 
 
-
 
NC_007493  RSP_1874  carbamoyl phosphate synthase small subunit  61.87 
 
 
387 aa  479  1e-134  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_008686  Pden_2165  carbamoyl phosphate synthase small subunit  59.79 
 
 
382 aa  476  1e-133  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0912  carbamoyl phosphate synthase small subunit  59.74 
 
 
447 aa  459  9.999999999999999e-129  Acidiphilium cryptum JF-5  Bacteria  normal  0.203932  n/a   
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  58.07 
 
 
467 aa  452  1.0000000000000001e-126  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_007794  Saro_2231  carbamoyl phosphate synthase small subunit  61.23 
 
 
391 aa  436  1e-121  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.961008  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  425  1e-118  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  426  1e-118  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  425  1e-118  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  426  1e-118  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  54.81 
 
 
381 aa  426  1e-118  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  425  1e-118  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  426  1e-118  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  54.29 
 
 
381 aa  426  1e-118  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  54.59 
 
 
390 aa  422  1e-117  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  55.41 
 
 
380 aa  424  1e-117  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  54.55 
 
 
380 aa  420  1e-116  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008048  Sala_0983  carbamoyl phosphate synthase small subunit  55.26 
 
 
423 aa  421  1e-116  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.2906  normal 
 
 
-
 
NC_008347  Mmar10_2132  carbamoyl-phosphate synthase small subunit  56.58 
 
 
390 aa  419  1e-116  Maricaulis maris MCS10  Bacteria  normal  normal  0.172352 
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  54.81 
 
 
384 aa  418  1e-116  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  53.54 
 
 
378 aa  417  9.999999999999999e-116  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  55.15 
 
 
384 aa  415  9.999999999999999e-116  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  53.54 
 
 
378 aa  416  9.999999999999999e-116  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  55.06 
 
 
391 aa  415  9.999999999999999e-116  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  54.29 
 
 
380 aa  417  9.999999999999999e-116  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  53.81 
 
 
380 aa  415  9.999999999999999e-116  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  54.29 
 
 
380 aa  417  9.999999999999999e-116  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  55.06 
 
 
380 aa  416  9.999999999999999e-116  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  53.02 
 
 
378 aa  414  1e-114  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  53.83 
 
 
381 aa  413  1e-114  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  54.55 
 
 
381 aa  411  1e-114  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  54.55 
 
 
380 aa  412  1e-114  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  51.93 
 
 
393 aa  410  1e-113  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  52.99 
 
 
383 aa  409  1e-113  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  53.66 
 
 
378 aa  407  1.0000000000000001e-112  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  53.25 
 
 
390 aa  405  1.0000000000000001e-112  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  52.31 
 
 
397 aa  405  1.0000000000000001e-112  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  53.19 
 
 
378 aa  406  1.0000000000000001e-112  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  52.73 
 
 
394 aa  407  1.0000000000000001e-112  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  53.25 
 
 
390 aa  405  1.0000000000000001e-112  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0834  carbamoyl phosphate synthase small subunit  51.36 
 
 
418 aa  405  1.0000000000000001e-112  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0896746  normal 
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  53.51 
 
 
382 aa  408  1.0000000000000001e-112  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  52.63 
 
 
440 aa  405  1.0000000000000001e-112  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  52.33 
 
 
388 aa  402  1e-111  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  52.62 
 
 
381 aa  402  1e-111  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_007969  Pcryo_0830  carbamoyl phosphate synthase small subunit  52.59 
 
 
410 aa  405  1e-111  Psychrobacter cryohalolentis K5  Bacteria  normal  0.915619  normal 
 
 
-
 
NC_007204  Psyc_0815  carbamoyl phosphate synthase small subunit  52.1 
 
 
410 aa  398  9.999999999999999e-111  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.0593166 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  54.07 
 
 
385 aa  400  9.999999999999999e-111  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  54.55 
 
 
379 aa  400  9.999999999999999e-111  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  53.44 
 
 
399 aa  400  9.999999999999999e-111  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  53.32 
 
 
399 aa  399  9.999999999999999e-111  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  53.03 
 
 
393 aa  395  1e-109  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  51.69 
 
 
392 aa  397  1e-109  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  52.74 
 
 
381 aa  395  1e-109  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  53.93 
 
 
386 aa  397  1e-109  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  52.89 
 
 
381 aa  397  1e-109  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  51.44 
 
 
383 aa  394  1e-108  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  52.24 
 
 
379 aa  393  1e-108  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  53.16 
 
 
385 aa  392  1e-108  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  50.78 
 
 
389 aa  393  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  52.62 
 
 
381 aa  393  1e-108  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  51.57 
 
 
378 aa  394  1e-108  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  51.83 
 
 
382 aa  389  1e-107  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  52.09 
 
 
382 aa  390  1e-107  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  52.88 
 
 
387 aa  391  1e-107  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  51.98 
 
 
376 aa  391  1e-107  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  50.52 
 
 
401 aa  391  1e-107  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
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