More than 300 homologs were found in PanDaTox collection
for query gene RPD_3986 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007406  Nwi_2446  carbamoyl phosphate synthase small subunit  84.34 
 
 		 396 aa  712    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.505949  normal  0.289169 
 
 
-
 
NC_009485  BBta_6791  carbamoyl phosphate synthase small subunit  87.66 
 
 		 398 aa  727    Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0374748 
 
 
-
 
NC_007778  RPB_4142  carbamoyl phosphate synthase small subunit  94.21 
 
 		 397 aa  782    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.164526  normal  1 
 
 
-
 
NC_007925  RPC_0960  carbamoyl phosphate synthase small subunit  91.92 
 
 		 396 aa  763    Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.0203745 
 
 
-
 
NC_007958  RPD_3986  carbamoyl phosphate synthase small subunit  100 
 
 		 397 aa  820    Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_2871  carbamoyl phosphate synthase small subunit  85.86 
 
 		 396 aa  722    Nitrobacter hamburgensis X14  Bacteria  normal  0.393325  n/a   
 
 
-
 
NC_011004  Rpal_1470  carbamoyl phosphate synthase small subunit  96.22 
 
 		 397 aa  795    Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1243  carbamoyl phosphate synthase small subunit  77.75 
 
 		 411 aa  644    Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_1622  carbamoyl-phosphate synthase, small subunit  71.21 
 
 		 398 aa  593  1e-168  Methylocella silvestris BL2  Bacteria  n/a    decreased coverage  0.0014107 
 
 
-
 
NC_008254  Meso_2083  carbamoyl phosphate synthase small subunit  70.77 
 
 		 399 aa  592  1e-168  Chelativorans sp. BNC1  Bacteria  normal  0.321442  n/a   
 
 
-
 
NC_009636  Smed_2229  carbamoyl phosphate synthase small subunit  69.31 
 
 		 401 aa  578  1e-164  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  69.57 
 
 		 405 aa  577  1.0000000000000001e-163  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.295908 
 
 
-
 
NC_011989  Avi_3111  carbamoyl phosphate synthase small subunit  69.85 
 
 		 406 aa  574  1.0000000000000001e-163  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  69.05 
 
 		 405 aa  575  1.0000000000000001e-163  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  69.64 
 
 		 402 aa  572  1.0000000000000001e-162  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.0322598 
 
 
-
 
NC_011369  Rleg2_2706  carbamoyl phosphate synthase small subunit  68.69 
 
 		 403 aa  572  1.0000000000000001e-162  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_2965  carbamoyl phosphate synthase small subunit  68.43 
 
 		 403 aa  568  1e-161  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.0448128 
 
 
-
 
NC_009667  Oant_1683  carbamoyl phosphate synthase small subunit  67.34 
 
 		 407 aa  559  1e-158  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR1483  carbamoyl phosphate synthase small subunit  66.83 
 
 		 407 aa  551  1e-156  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_0626  carbamoyl-phosphate synthase, small subunit  69.69 
 
 		 416 aa  553  1e-156  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.265795 
 
 
-
 
NC_010725  Mpop_0591  carbamoyl-phosphate synthase, small subunit  69.95 
 
 		 416 aa  552  1e-156  Methylobacterium populi BJ001  Bacteria  normal  0.88824  normal  0.101077 
 
 
-
 
NC_010172  Mext_0615  carbamoyl-phosphate synthase, small subunit  69.69 
 
 		 416 aa  553  1e-156  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.156891 
 
 
-
 
NC_009505  BOV_1439  carbamoyl phosphate synthase small subunit  66.83 
 
 		 407 aa  552  1e-156  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_0570  carbamoyl-phosphate synthase, small subunit  69.01 
 
 		 410 aa  549  1e-155  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.308304 
 
 
-
 
NC_008783  BARBAKC583_0972  carbamoyl phosphate synthase small subunit  65.3 
 
 		 399 aa  534  1e-150  Bartonella bacilliformis KC583  Bacteria  normal  0.0520373  n/a   
 
 
-
 
NC_010581  Bind_3531  carbamoyl-phosphate synthase, small subunit  64.86 
 
 		 421 aa  518  1e-146  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.56559  normal  1 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  64.27 
 
 		 389 aa  515  1.0000000000000001e-145  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  64.68 
 
 		 392 aa  514  1e-144  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal  1 
 
 
-
 
NC_010338  Caul_1037  carbamoyl phosphate synthase small subunit  64.64 
 
 		 388 aa  514  1e-144  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_2294  carbamoyl phosphate synthase small subunit  63.19 
 
 		 386 aa  505  9.999999999999999e-143  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009049  Rsph17029_0524  carbamoyl phosphate synthase small subunit  64.53 
 
 		 387 aa  503  1e-141  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29904  normal  1 
 
 
-
 
NC_009428  Rsph17025_0661  carbamoyl phosphate synthase small subunit  64.1 
 
 		 387 aa  501  1e-140  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.693727  normal  0.143114 
 
 
-
 
NC_009952  Dshi_2387  carbamoyl phosphate synthase small subunit  64.81 
 
 		 389 aa  495  1e-139  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0953377  normal  0.858607 
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  62.04 
 
 		 384 aa  496  1e-139  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal  1 
 
 
-
 
NC_008686  Pden_2165  carbamoyl phosphate synthase small subunit  61.1 
 
 		 382 aa  489  1e-137  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_1874  carbamoyl phosphate synthase small subunit  63.27 
 
 		 387 aa  486  1e-136  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_009484  Acry_0912  carbamoyl phosphate synthase small subunit  62.7 
 
 		 447 aa  471  1.0000000000000001e-131  Acidiphilium cryptum JF-5  Bacteria  normal  0.203932  n/a   
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  59.11 
 
 		 467 aa  449  1e-125  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_007794  Saro_2231  carbamoyl phosphate synthase small subunit  61.5 
 
 		 391 aa  445  1.0000000000000001e-124  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.961008  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  55.58 
 
 		 381 aa  432  1e-120  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  55.84 
 
 		 381 aa  434  1e-120  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  55.84 
 
 		 381 aa  434  1e-120  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  55.84 
 
 		 381 aa  434  1e-120  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  55.84 
 
 		 381 aa  434  1e-120  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008048  Sala_0983  carbamoyl phosphate synthase small subunit  56.6 
 
 		 423 aa  434  1e-120  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.2906  normal  1 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  55.58 
 
 		 381 aa  432  1e-120  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  55.84 
 
 		 381 aa  434  1e-120  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  55.32 
 
 		 381 aa  429  1e-119  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  54.59 
 
 		 378 aa  428  1e-119  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal  1 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  54.69 
 
 		 378 aa  428  1e-118  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  57.14 
 
 		 384 aa  427  1e-118  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  55.64 
 
 		 380 aa  426  1e-118  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_2132  carbamoyl-phosphate synthase small subunit  57.11 
 
 		 390 aa  426  1e-118  Maricaulis maris MCS10  Bacteria  normal  1  normal  0.172352 
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  54.33 
 
 		 378 aa  426  1e-118  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  56.1 
 
 		 380 aa  422  1e-117  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal  1 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  55.41 
 
 		 380 aa  424  1e-117  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal  1 
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  55.44 
 
 		 391 aa  422  1e-117  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  55.05 
 
 		 378 aa  420  1e-116  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  54.83 
 
 		 382 aa  420  1e-116  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  54.55 
 
 		 380 aa  419  1e-116  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  55.64 
 
 		 384 aa  421  1e-116  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal  1 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  54.71 
 
 		 378 aa  415  9.999999999999999e-116  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  53.54 
 
 		 393 aa  416  9.999999999999999e-116  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0283036 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  54.59 
 
 		 390 aa  416  9.999999999999999e-116  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  54.29 
 
 		 380 aa  417  9.999999999999999e-116  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  54.29 
 
 		 380 aa  417  9.999999999999999e-116  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  55.58 
 
 		 381 aa  414  1e-114  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  0.381236 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  53.95 
 
 		 440 aa  413  1e-114  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009524  PsycPRwf_0834  carbamoyl phosphate synthase small subunit  52.11 
 
 		 418 aa  413  1e-114  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0896746  normal  1 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  55.58 
 
 		 380 aa  414  1e-114  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  53.37 
 
 		 388 aa  411  1e-113  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.259128 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  55.73 
 
 		 385 aa  408  1e-113  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal  1 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  53.32 
 
 		 397 aa  410  1e-113  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  53.77 
 
 		 390 aa  410  1e-113  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  53.77 
 
 		 390 aa  410  1e-113  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  52.45 
 
 		 383 aa  409  1e-113  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  52.99 
 
 		 394 aa  408  1e-113  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  52.73 
 
 		 392 aa  408  1e-113  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.752092 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  54.74 
 
 		 379 aa  405  1.0000000000000001e-112  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal  1 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  53.66 
 
 		 381 aa  405  1.0000000000000001e-112  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  52.74 
 
 		 383 aa  404  1e-111  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  54.71 
 
 		 386 aa  401  1e-111  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  53.3 
 
 		 381 aa  404  1e-111  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  53.58 
 
 		 399 aa  399  9.999999999999999e-111  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  52.08 
 
 		 389 aa  400  9.999999999999999e-111  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  53.42 
 
 		 387 aa  400  9.999999999999999e-111  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal  1 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  52.33 
 
 		 401 aa  400  9.999999999999999e-111  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007969  Pcryo_0830  carbamoyl phosphate synthase small subunit  51.98 
 
 		 410 aa  400  9.999999999999999e-111  Psychrobacter cryohalolentis K5  Bacteria  normal  0.915619  normal  1 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  53.83 
 
 		 393 aa  399  9.999999999999999e-111  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.0542874 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  52.59 
 
 		 381 aa  399  9.999999999999999e-111  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  53.58 
 
 		 399 aa  397  1e-109  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_007204  Psyc_0815  carbamoyl phosphate synthase small subunit  51.49 
 
 		 410 aa  397  1e-109  Psychrobacter arcticus 273-4  Bacteria  normal  1  normal  0.0593166 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  53.72 
 
 		 379 aa  397  1e-109  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  53.11 
 
 		 385 aa  398  1e-109  Shewanella sediminis HAW-EB3  Bacteria  normal  1  hitchhiker  0.0000786314 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  52.77 
 
 		 376 aa  397  1e-109  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  52.58 
 
 		 398 aa  398  1e-109  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  0.287672 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  52.22 
 
 		 381 aa  396  1e-109  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  52.67 
 
 		 383 aa  398  1e-109  Methylibium petroleiphilum PM1  Bacteria  normal  1  decreased coverage  0.00672288 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  52.09 
 
 		 378 aa  398  1e-109  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  53.37 
 
 		 381 aa  394  1e-108  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal  1 
 
 
-
 
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