More than 300 homologs were found in PanDaTox collection
for query gene Msil_1622 on replicon NC_011666
Organism: Methylocella silvestris BL2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_1622  carbamoyl-phosphate synthase, small subunit  100 
 
 
398 aa  820    Methylocella silvestris BL2  Bacteria  n/a    decreased coverage  0.0014107 
 
 
-
 
NC_007778  RPB_4142  carbamoyl phosphate synthase small subunit  72.08 
 
 
397 aa  600  1e-170  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.164526  normal 
 
 
-
 
NC_007958  RPD_3986  carbamoyl phosphate synthase small subunit  71.21 
 
 
397 aa  593  1e-168  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1470  carbamoyl phosphate synthase small subunit  70.69 
 
 
397 aa  589  1e-167  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  71.14 
 
 
405 aa  583  1.0000000000000001e-165  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.295908 
 
 
-
 
NC_007406  Nwi_2446  carbamoyl phosphate synthase small subunit  70.05 
 
 
396 aa  582  1.0000000000000001e-165  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.505949  normal  0.289169 
 
 
-
 
NC_007925  RPC_0960  carbamoyl phosphate synthase small subunit  71.06 
 
 
396 aa  582  1.0000000000000001e-165  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0203745 
 
 
-
 
NC_007964  Nham_2871  carbamoyl phosphate synthase small subunit  69.27 
 
 
396 aa  582  1.0000000000000001e-165  Nitrobacter hamburgensis X14  Bacteria  normal  0.393325  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  72.19 
 
 
405 aa  582  1.0000000000000001e-165  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_010172  Mext_0615  carbamoyl-phosphate synthase, small subunit  72.26 
 
 
416 aa  578  1e-164  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.156891 
 
 
-
 
NC_011757  Mchl_0626  carbamoyl-phosphate synthase, small subunit  72.52 
 
 
416 aa  580  1e-164  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.265795 
 
 
-
 
NC_010505  Mrad2831_0570  carbamoyl-phosphate synthase, small subunit  73.1 
 
 
410 aa  577  1.0000000000000001e-163  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.308304 
 
 
-
 
NC_010725  Mpop_0591  carbamoyl-phosphate synthase, small subunit  72.26 
 
 
416 aa  575  1.0000000000000001e-163  Methylobacterium populi BJ001  Bacteria  normal  0.88824  normal  0.101077 
 
 
-
 
NC_009485  BBta_6791  carbamoyl phosphate synthase small subunit  68.78 
 
 
398 aa  573  1.0000000000000001e-162  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0374748 
 
 
-
 
NC_010581  Bind_3531  carbamoyl-phosphate synthase, small subunit  69.55 
 
 
421 aa  566  1e-160  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.56559  normal 
 
 
-
 
NC_009720  Xaut_1243  carbamoyl phosphate synthase small subunit  66.58 
 
 
411 aa  564  1.0000000000000001e-159  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2083  carbamoyl phosphate synthase small subunit  68.03 
 
 
399 aa  560  1e-158  Chelativorans sp. BNC1  Bacteria  normal  0.321442  n/a   
 
 
-
 
NC_009636  Smed_2229  carbamoyl phosphate synthase small subunit  67.26 
 
 
401 aa  544  1e-153  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1683  carbamoyl phosphate synthase small subunit  64.65 
 
 
407 aa  535  1e-151  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3111  carbamoyl phosphate synthase small subunit  65.56 
 
 
406 aa  537  1e-151  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2965  carbamoyl phosphate synthase small subunit  65.21 
 
 
403 aa  531  1e-150  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0448128 
 
 
-
 
NC_011369  Rleg2_2706  carbamoyl phosphate synthase small subunit  64.96 
 
 
403 aa  533  1e-150  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1439  carbamoyl phosphate synthase small subunit  66.07 
 
 
407 aa  528  1e-149  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1483  carbamoyl phosphate synthase small subunit  66.07 
 
 
407 aa  527  1e-148  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  65.03 
 
 
402 aa  525  1e-148  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_008783  BARBAKC583_0972  carbamoyl phosphate synthase small subunit  59.58 
 
 
399 aa  489  1e-137  Bartonella bacilliformis KC583  Bacteria  normal  0.0520373  n/a   
 
 
-
 
NC_008044  TM1040_2294  carbamoyl phosphate synthase small subunit  62.63 
 
 
386 aa  484  1e-136  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1037  carbamoyl phosphate synthase small subunit  61.15 
 
 
388 aa  479  1e-134  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  61.94 
 
 
392 aa  480  1e-134  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  62.27 
 
 
389 aa  476  1e-133  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  60.86 
 
 
384 aa  466  9.999999999999999e-131  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal 
 
 
-
 
NC_009049  Rsph17029_0524  carbamoyl phosphate synthase small subunit  60.59 
 
 
387 aa  464  1e-129  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29904  normal 
 
 
-
 
NC_009428  Rsph17025_0661  carbamoyl phosphate synthase small subunit  59.89 
 
 
387 aa  463  1e-129  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.693727  normal  0.143114 
 
 
-
 
NC_009952  Dshi_2387  carbamoyl phosphate synthase small subunit  60.65 
 
 
389 aa  454  1.0000000000000001e-126  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0953377  normal  0.858607 
 
 
-
 
NC_008686  Pden_2165  carbamoyl phosphate synthase small subunit  57.96 
 
 
382 aa  452  1.0000000000000001e-126  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1874  carbamoyl phosphate synthase small subunit  59.25 
 
 
387 aa  449  1e-125  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_009484  Acry_0912  carbamoyl phosphate synthase small subunit  58.73 
 
 
447 aa  442  1e-123  Acidiphilium cryptum JF-5  Bacteria  normal  0.203932  n/a   
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  56.85 
 
 
467 aa  439  9.999999999999999e-123  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_008347  Mmar10_2132  carbamoyl-phosphate synthase small subunit  60.33 
 
 
390 aa  438  9.999999999999999e-123  Maricaulis maris MCS10  Bacteria  normal  normal  0.172352 
 
 
-
 
NC_008048  Sala_0983  carbamoyl phosphate synthase small subunit  57.11 
 
 
423 aa  437  1e-121  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.2906  normal 
 
 
-
 
NC_007794  Saro_2231  carbamoyl phosphate synthase small subunit  57.48 
 
 
391 aa  416  9.999999999999999e-116  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.961008  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  54.64 
 
 
381 aa  412  1e-114  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  53.83 
 
 
378 aa  409  1e-113  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  54.47 
 
 
380 aa  409  1e-113  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  53.32 
 
 
381 aa  405  1.0000000000000001e-112  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  53.58 
 
 
380 aa  405  1.0000000000000001e-112  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  53.32 
 
 
381 aa  405  1.0000000000000001e-112  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  53.32 
 
 
381 aa  405  1.0000000000000001e-112  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  53.32 
 
 
381 aa  405  1.0000000000000001e-112  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  53.56 
 
 
378 aa  407  1.0000000000000001e-112  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  53.58 
 
 
381 aa  407  1.0000000000000001e-112  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  53.32 
 
 
381 aa  405  1.0000000000000001e-112  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  53.95 
 
 
378 aa  403  1e-111  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  53.87 
 
 
381 aa  402  1e-111  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  55.41 
 
 
390 aa  403  1e-111  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  53.05 
 
 
381 aa  403  1e-111  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  53.85 
 
 
380 aa  404  1e-111  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  54.05 
 
 
387 aa  402  1e-111  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  54.73 
 
 
391 aa  403  1e-111  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  53.85 
 
 
380 aa  404  1e-111  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  53.85 
 
 
380 aa  404  1e-111  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  55.12 
 
 
384 aa  399  9.999999999999999e-111  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  54.64 
 
 
380 aa  401  9.999999999999999e-111  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  54.64 
 
 
381 aa  398  9.999999999999999e-111  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  54.64 
 
 
380 aa  398  9.999999999999999e-111  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  55.56 
 
 
378 aa  396  1e-109  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  53.81 
 
 
384 aa  395  1e-109  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  53.4 
 
 
381 aa  395  1e-109  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  53.7 
 
 
393 aa  395  1e-108  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  53.19 
 
 
378 aa  390  1e-107  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  53.21 
 
 
399 aa  389  1e-107  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_009524  PsycPRwf_0834  carbamoyl phosphate synthase small subunit  48.25 
 
 
418 aa  389  1e-107  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0896746  normal 
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  52.2 
 
 
399 aa  387  1e-106  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  52.12 
 
 
383 aa  387  1e-106  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  52.77 
 
 
381 aa  388  1e-106  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  52.77 
 
 
382 aa  387  1e-106  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  51.83 
 
 
391 aa  383  1e-105  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  51.85 
 
 
378 aa  382  1e-105  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_007204  Psyc_0815  carbamoyl phosphate synthase small subunit  48.62 
 
 
410 aa  382  1e-105  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.0593166 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  52.11 
 
 
390 aa  382  1e-105  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  52.12 
 
 
376 aa  384  1e-105  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  51.55 
 
 
401 aa  382  1e-105  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  50.39 
 
 
393 aa  384  1e-105  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  51.83 
 
 
382 aa  383  1e-105  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  53.3 
 
 
386 aa  384  1e-105  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  51.32 
 
 
381 aa  383  1e-105  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  51.19 
 
 
440 aa  383  1e-105  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  51.84 
 
 
381 aa  383  1e-105  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  51.6 
 
 
379 aa  378  1e-104  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  51.71 
 
 
386 aa  381  1e-104  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  52.93 
 
 
385 aa  380  1e-104  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  52.99 
 
 
382 aa  378  1e-104  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  50.53 
 
 
379 aa  379  1e-104  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  50.39 
 
 
384 aa  379  1e-104  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  51.31 
 
 
382 aa  379  1e-104  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  52.24 
 
 
385 aa  380  1e-104  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  51.32 
 
 
386 aa  379  1e-104  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  51.05 
 
 
392 aa  378  1e-104  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  51.72 
 
 
377 aa  378  1e-104  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  52.13 
 
 
383 aa  379  1e-104  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.00672288 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>