| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1246 |
|---|
| Symbol | |
|---|
| ID | 3933691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 1201626 |
|---|
| End bp | 1202780 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903594 |
|---|
| Product | carbamoyl phosphate synthase small subunit |
|---|
| Protein accession | YP_509188 |
|---|
| Protein GI | 161898396 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.55567 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATC ACCCCACCGC CTGCCTTGCC CTCGCCGATG GCACCATCTT CTACGGCAAA
GGGTTTGGGG CCACCGGCAT GCGCGTGGCG GAACTGTGCT TCAACACCGC CATGACCGGC
TATCAGGAGA TCATGACCGA CCCGTCCTAC GCGGGGCAGA TCGTGACCTT CACCTTCCCC
CATATCGGCA ATACCGGGAC GAATGTGGAC GATGACGAAA CCGCCGATCC CGTGGCCGAG
GGAATGGTGG TGAAGTGGGA CGTGACCGAG CCGTCGAACT GGCGCGCGCA ATCGCATCTG
GTAGATTGGC TGGCGCGCAC GGGACGCGTC GGCATCGGCG GCGTCGACAC ACGGCGGCTG
ACGCGTGAGA TCCGGCAACA GGGCGCACCG CATGTGGCCC TGGCCCATGA TCCGGACGGT
AACTTTGATA TCGAGGCGAT GGTCAAGGCC GCCCGGGATT TCGCCGGTCT GGAAGGCGTT
GATCTGGCCA AGGACGTCAC CTGCGCGCAA TCCTACCGCT GGGATGAGAT GCGGTGGGCC
TGGCCCGAGG GCTACACCAA GCGGACAGGT CCCGCCCCCA AGGTTGTCGC GCTGGATTAC
GGTGCGAAAC GCAACATCCT GCGCTGCCTG GCGAGCGCTG GTATGGACGT CACCGTGATG
CCCGCCACCA CGACAGCGGA GGAGGTTCTG GCCCAATCCC CCGACGGCGT CTTCCTGTCC
AACGGCCCCG GCGACCCGGC GGCCACGGGC GCATATGCCG TCCCGATGAT CAAGGGCGTC
TTGGAAGCGG ACATGCCCGT CTTCGGGATT TGCCTTGGCC ACCAGATGCT GGCCCTCGCA
CTTGGCGCCA AGACCGTGAA GATGAACCAC GGCCACCACG GCGCGAACCA TCCTGTGAAG
GAGATCGGCA CCGGCAAGGT GGAAATCACG TCGATGAACC ACGGCTTCAC GGTCGACAGC
CAAAGCCTGC CCGAGGGCGT GTCCGAGACC CATGTAAGCC TTTTTGACGG CTCGAACTGT
GGCATCGCGG TGGAGGGAAA ACCGATCTTC TCGGTCCAGC ATCACCCGGA GGCCAGCCCC
GGCCCGCAAG ACAGCTTCTA CCTGTTCGAG CGCTTTGCCG ACGCCGTCAC GGCGCGCACC
AAAACGAAAG CGTAA
|
|---|
| Protein sequence | MSDHPTACLA LADGTIFYGK GFGATGMRVA ELCFNTAMTG YQEIMTDPSY AGQIVTFTFP
HIGNTGTNVD DDETADPVAE GMVVKWDVTE PSNWRAQSHL VDWLARTGRV GIGGVDTRRL
TREIRQQGAP HVALAHDPDG NFDIEAMVKA ARDFAGLEGV DLAKDVTCAQ SYRWDEMRWA
WPEGYTKRTG PAPKVVALDY GAKRNILRCL ASAGMDVTVM PATTTAEEVL AQSPDGVFLS
NGPGDPAATG AYAVPMIKGV LEADMPVFGI CLGHQMLALA LGAKTVKMNH GHHGANHPVK
EIGTGKVEIT SMNHGFTVDS QSLPEGVSET HVSLFDGSNC GIAVEGKPIF SVQHHPEASP
GPQDSFYLFE RFADAVTART KTKA
|
|---|
| |