More than 300 homologs were found in PanDaTox collection
for query gene Pden_2165 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008686  Pden_2165  carbamoyl phosphate synthase small subunit  100 
 
 		 382 aa  789    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_0661  carbamoyl phosphate synthase small subunit  79.13 
 
 		 387 aa  620  1e-177  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.693727  normal  0.143114 
 
 
-
 
NC_009049  Rsph17029_0524  carbamoyl phosphate synthase small subunit  78.26 
 
 		 387 aa  616  1e-175  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29904  normal  1 
 
 
-
 
NC_008044  TM1040_2294  carbamoyl phosphate synthase small subunit  75.99 
 
 		 386 aa  608  1e-173  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_1874  carbamoyl phosphate synthase small subunit  76.9 
 
 		 387 aa  598  1e-170  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  73.68 
 
 		 384 aa  595  1e-169  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal  1 
 
 
-
 
NC_009952  Dshi_2387  carbamoyl phosphate synthase small subunit  75.81 
 
 		 389 aa  595  1e-169  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0953377  normal  0.858607 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  64.74 
 
 		 389 aa  499  1e-140  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  62.8 
 
 		 402 aa  496  1e-139  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.0322598 
 
 
-
 
NC_008254  Meso_2083  carbamoyl phosphate synthase small subunit  62.4 
 
 		 399 aa  497  1e-139  Chelativorans sp. BNC1  Bacteria  normal  0.321442  n/a   
 
 
-
 
NC_009636  Smed_2229  carbamoyl phosphate synthase small subunit  63.31 
 
 		 401 aa  495  1e-139  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009505  BOV_1439  carbamoyl phosphate synthase small subunit  63.28 
 
 		 407 aa  491  9.999999999999999e-139  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_1683  carbamoyl phosphate synthase small subunit  62.5 
 
 		 407 aa  494  9.999999999999999e-139  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_011004  Rpal_1470  carbamoyl phosphate synthase small subunit  61.36 
 
 		 397 aa  491  9.999999999999999e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011989  Avi_3111  carbamoyl phosphate synthase small subunit  62.24 
 
 		 406 aa  493  9.999999999999999e-139  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR1483  carbamoyl phosphate synthase small subunit  63.28 
 
 		 407 aa  491  1e-137  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  62.73 
 
 		 405 aa  488  1e-137  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_007958  RPD_3986  carbamoyl phosphate synthase small subunit  61.1 
 
 		 397 aa  489  1e-137  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4142  carbamoyl phosphate synthase small subunit  60.31 
 
 		 397 aa  483  1e-135  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.164526  normal  1 
 
 
-
 
NC_012850  Rleg_2965  carbamoyl phosphate synthase small subunit  60.72 
 
 		 403 aa  480  1e-134  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.0448128 
 
 
-
 
NC_011369  Rleg2_2706  carbamoyl phosphate synthase small subunit  60.72 
 
 		 403 aa  480  1e-134  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_1037  carbamoyl phosphate synthase small subunit  60.26 
 
 		 388 aa  479  1e-134  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  61.15 
 
 		 405 aa  476  1e-133  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.295908 
 
 
-
 
NC_007925  RPC_0960  carbamoyl phosphate synthase small subunit  59.79 
 
 		 396 aa  476  1e-133  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.0203745 
 
 
-
 
NC_007964  Nham_2871  carbamoyl phosphate synthase small subunit  60.47 
 
 		 396 aa  476  1e-133  Nitrobacter hamburgensis X14  Bacteria  normal  0.393325  n/a   
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  60.79 
 
 		 392 aa  475  1e-133  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal  1 
 
 
-
 
NC_009720  Xaut_1243  carbamoyl phosphate synthase small subunit  60.73 
 
 		 411 aa  476  1e-133  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_6791  carbamoyl phosphate synthase small subunit  59.27 
 
 		 398 aa  471  1e-132  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0374748 
 
 
-
 
NC_007406  Nwi_2446  carbamoyl phosphate synthase small subunit  59.95 
 
 		 396 aa  473  1e-132  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.505949  normal  0.289169 
 
 
-
 
NC_008783  BARBAKC583_0972  carbamoyl phosphate synthase small subunit  56.14 
 
 		 399 aa  462  1e-129  Bartonella bacilliformis KC583  Bacteria  normal  0.0520373  n/a   
 
 
-
 
NC_011757  Mchl_0626  carbamoyl-phosphate synthase, small subunit  60.26 
 
 		 416 aa  460  9.999999999999999e-129  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.265795 
 
 
-
 
NC_010505  Mrad2831_0570  carbamoyl-phosphate synthase, small subunit  61.38 
 
 		 410 aa  459  9.999999999999999e-129  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.308304 
 
 
-
 
NC_010172  Mext_0615  carbamoyl-phosphate synthase, small subunit  60 
 
 		 416 aa  459  9.999999999999999e-129  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.156891 
 
 
-
 
NC_010725  Mpop_0591  carbamoyl-phosphate synthase, small subunit  60.26 
 
 		 416 aa  461  9.999999999999999e-129  Methylobacterium populi BJ001  Bacteria  normal  0.88824  normal  0.101077 
 
 
-
 
NC_011666  Msil_1622  carbamoyl-phosphate synthase, small subunit  57.96 
 
 		 398 aa  452  1.0000000000000001e-126  Methylocella silvestris BL2  Bacteria  n/a    decreased coverage  0.0014107 
 
 
-
 
NC_009484  Acry_0912  carbamoyl phosphate synthase small subunit  60.32 
 
 		 447 aa  448  1e-125  Acidiphilium cryptum JF-5  Bacteria  normal  0.203932  n/a   
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  60.48 
 
 		 467 aa  449  1e-125  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_010581  Bind_3531  carbamoyl-phosphate synthase, small subunit  56.69 
 
 		 421 aa  441  9.999999999999999e-123  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.56559  normal  1 
 
 
-
 
NC_008048  Sala_0983  carbamoyl phosphate synthase small subunit  54.88 
 
 		 423 aa  428  1e-119  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.2906  normal  1 
 
 
-
 
NC_007794  Saro_2231  carbamoyl phosphate synthase small subunit  58.05 
 
 		 391 aa  425  1e-118  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.961008  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  53.44 
 
 		 381 aa  409  1e-113  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  53.58 
 
 		 379 aa  405  1.0000000000000001e-112  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  53.93 
 
 		 399 aa  402  1e-111  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  52.79 
 
 		 416 aa  400  9.999999999999999e-111  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  52.24 
 
 		 379 aa  398  9.999999999999999e-111  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  54.4 
 
 		 390 aa  400  9.999999999999999e-111  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  51.44 
 
 		 384 aa  400  9.999999999999999e-111  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  53.66 
 
 		 399 aa  400  9.999999999999999e-111  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  51.19 
 
 		 382 aa  396  1e-109  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  51.19 
 
 		 382 aa  396  1e-109  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  51.19 
 
 		 382 aa  396  1e-109  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  51.19 
 
 		 382 aa  396  1e-109  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  51.19 
 
 		 382 aa  396  1e-109  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  54.43 
 
 		 378 aa  397  1e-109  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  51.19 
 
 		 391 aa  396  1e-109  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  52.36 
 
 		 378 aa  397  1e-109  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal  1 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  52.19 
 
 		 398 aa  395  1e-109  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  0.287672 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  51.19 
 
 		 382 aa  396  1e-109  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  51.19 
 
 		 382 aa  396  1e-109  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  52.24 
 
 		 381 aa  395  1e-109  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  52.23 
 
 		 393 aa  395  1e-109  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.0542874 
 
 
-
 
NC_008347  Mmar10_2132  carbamoyl-phosphate synthase small subunit  53.19 
 
 		 390 aa  397  1e-109  Maricaulis maris MCS10  Bacteria  normal  1  normal  0.172352 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  53.02 
 
 		 378 aa  395  1e-109  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  52.69 
 
 		 397 aa  397  1e-109  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  50.92 
 
 		 382 aa  394  1e-108  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.314254 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  55.15 
 
 		 378 aa  392  1e-108  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  53.11 
 
 		 378 aa  393  1e-108  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  53.44 
 
 		 385 aa  394  1e-108  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal  1 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  50.66 
 
 		 382 aa  393  1e-108  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  50.66 
 
 		 382 aa  392  1e-108  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  53.05 
 
 		 378 aa  392  1e-108  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  53.14 
 
 		 380 aa  391  1e-108  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  51.95 
 
 		 383 aa  394  1e-108  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  52.52 
 
 		 393 aa  393  1e-108  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0283036 
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  54.29 
 
 		 394 aa  394  1e-108  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  52.8 
 
 		 387 aa  394  1e-108  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal  1 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  53.23 
 
 		 379 aa  394  1e-108  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  51.83 
 
 		 378 aa  394  1e-108  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  52.73 
 
 		 378 aa  394  1e-108  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  50.66 
 
 		 382 aa  391  1e-108  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  50.66 
 
 		 391 aa  393  1e-108  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  52.67 
 
 		 381 aa  393  1e-108  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  53.79 
 
 		 378 aa  389  1e-107  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  51.04 
 
 		 378 aa  388  1e-107  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  52.48 
 
 		 384 aa  389  1e-107  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  51.68 
 
 		 382 aa  390  1e-107  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  50.4 
 
 		 382 aa  390  1e-107  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  52.88 
 
 		 378 aa  391  1e-107  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  50.92 
 
 		 381 aa  389  1e-107  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  51.18 
 
 		 380 aa  390  1e-107  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal  1 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  52.47 
 
 		 378 aa  391  1e-107  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  53.79 
 
 		 386 aa  389  1e-107  Pseudomonas putida F1  Bacteria  normal  1  normal  0.740896 
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  54.33 
 
 		 386 aa  391  1e-107  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  50.66 
 
 		 381 aa  389  1e-107  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  51.56 
 
 		 401 aa  389  1e-107  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  51.18 
 
 		 380 aa  389  1e-107  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  51.18 
 
 		 380 aa  390  1e-107  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  51.18 
 
 		 380 aa  389  1e-107  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  53.79 
 
 		 378 aa  389  1e-107  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  50.27 
 
 		 378 aa  387  1e-106  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
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