| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3947 |
|---|
| Symbol | |
|---|
| ID | 8546343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5444793 |
|---|
| End bp | 5446019 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646388619 |
|---|
| Product | carbamoyl-phosphate synthase, small subunit |
|---|
| Protein accession | YP_003268339 |
|---|
| Protein GI | 262197130 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.201135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00383855 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACG AGGAAGACGC GCGCGAGGAC GCGCTGCTGC TGCTCGAGAG CGGCCGGGTG
TTCCGCGGCC GGGCCCTGGG CGCGCGCGGC AAGGTGTTTG GCGAGGCGGT GTTCAACACC
TCGATGACCG GCTACCAGGA GATCGTCACC GATCCCTCGT ATTCCGGCCA GATCGTGGTC
ATGACCGCGC CCCAGATCGG CAACACCGGC ATCAACCGCG AGGATATCGA GTCGGCCAAG
CCCATGTGCG CCGGCTTCGC GGTGCGCGAG GCCTCGCCGC TGGCCTCGAG CTGGCGCGCC
TCGGGCGAGC TCGACGAGTA CCTGCGCGCC AGCGGCATCG TCGGCATCGA GGGCATCGAC
ACCCGCGCGC TCACCCGCGC CCTGCGCACG GCCGGCGCCC AGCGCGCGGT GGTGGCCAGC
GGCGCTCACG ACGACGAGGC CGTGGCCGCG CTGCTCGCCG AGGTGCGCGA GGCGCCGCAC
ATGAACGGCC TCGACCTGGC CTCGCGCGTG ACCTGTGCCG AGCGCTACCA GTGGCCGCCG
AGCGCGCCCG AGGCCGCCGA GGCCGCGCGC CAGCTCAGCG AGCGCTGGCT GCCCGCGAGC
ACCCGCGTAG GCGCGGACAC CCGCGAGGAC GCGGGCGCGC GCTTTCACGT GGTCGCCTAC
GACTTCGGCA TGAAGCACAA CATCCTCGCC TGCCTGGCGC GGCTCGGCTG CCGCGTCACC
GTGGTGCCGG CCAGCACCTC GGCCGCCGAC GCGCTGGCGC TCGCGCCCGA CGGCGTGTTC
CTGTCCAACG GCCCCGGCGA CCCGGCCGCG GTCGGCTACG CGGTCGAGGC CGTGGCCGAG
CTGGCGGCCT CGGGCAAGCC GCTCTTCGGC ATCTGCCTGG GCCACCAGAT CCTGGCCCTG
GCGCTGGGCG CGAGCACCTA CAAGCTGCCC TTTGGCCACC ACGGCGGCAA CCACCCGGTG
CAGGACCTGG CCAGCAAGCG CATCGAGATC TCGGCCCATA ACCACGGCTT CGCCGTCGCC
GAAGACTCGC TGCCCGAGAC CGTGCGCTGC ACCCACCGCA ACCTCTACGA CGACACCGTC
GAGGGCATCG AGCTGGTCGG CGCGCCCGTG TTCGGCATCC AGTACCATCC CGAGGCCAGC
CCCGGGCCGC ACGACGCGCT GGGCGTTTTC GACCGCTTCG TCGACGCCAT GGCCAGCGCG
CAGGGCGAGG GCGGTACGAC GACGTGA
|
|---|
| Protein sequence | MSHEEDARED ALLLLESGRV FRGRALGARG KVFGEAVFNT SMTGYQEIVT DPSYSGQIVV
MTAPQIGNTG INREDIESAK PMCAGFAVRE ASPLASSWRA SGELDEYLRA SGIVGIEGID
TRALTRALRT AGAQRAVVAS GAHDDEAVAA LLAEVREAPH MNGLDLASRV TCAERYQWPP
SAPEAAEAAR QLSERWLPAS TRVGADTRED AGARFHVVAY DFGMKHNILA CLARLGCRVT
VVPASTSAAD ALALAPDGVF LSNGPGDPAA VGYAVEAVAE LAASGKPLFG ICLGHQILAL
ALGASTYKLP FGHHGGNHPV QDLASKRIEI SAHNHGFAVA EDSLPETVRC THRNLYDDTV
EGIELVGAPV FGIQYHPEAS PGPHDALGVF DRFVDAMASA QGEGGTTT
|
|---|
| |