More than 300 homologs were found in PanDaTox collection
for query gene Franean1_2995 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_2995  short-chain dehydrogenase/reductase SDR  100 
 
 
191 aa  380  1e-105  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5212  short chain dehydrogenase  40.4 
 
 
348 aa  103  2e-21  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5592  short chain dehydrogenase  40.4 
 
 
348 aa  103  2e-21  Mycobacterium sp. JLS  Bacteria  normal  normal  0.23191 
 
 
-
 
NC_008705  Mkms_5300  short chain dehydrogenase  40.4 
 
 
348 aa  103  2e-21  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12160  short chain dehydrogenase  38.41 
 
 
293 aa  101  6e-21  Mycobacterium tuberculosis F11  Bacteria  normal  0.223019  normal  0.712287 
 
 
-
 
NC_013510  Tcur_3953  short-chain dehydrogenase/reductase SDR  39.74 
 
 
292 aa  100  1e-20  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1201  short-chain dehydrogenase/reductase SDR  39.22 
 
 
289 aa  99.8  2e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008545  Bcen2424_6846  short-chain dehydrogenase/reductase SDR  39.22 
 
 
289 aa  97.8  7e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3152  short chain dehydrogenase  36.16 
 
 
294 aa  97.1  1e-19  Mycobacterium sp. MCS  Bacteria  normal  0.0242299  n/a   
 
 
-
 
NC_008705  Mkms_3214  short chain dehydrogenase  36.16 
 
 
294 aa  97.1  1e-19  Mycobacterium sp. KMS  Bacteria  normal  0.592331  normal  0.549818 
 
 
-
 
NC_009077  Mjls_3164  short chain dehydrogenase  36.16 
 
 
291 aa  97.1  1e-19  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0562  short-chain dehydrogenase/reductase SDR  41.72 
 
 
263 aa  92.4  3e-18  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6159  short-chain dehydrogenase/reductase SDR  40 
 
 
275 aa  90.1  2e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6452  short-chain dehydrogenase/reductase SDR  39.26 
 
 
275 aa  89.7  2e-17  Burkholderia ambifaria AMMD  Bacteria  normal  0.0358562  normal 
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  36.42 
 
 
262 aa  84.3  9e-16  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_013730  Slin_0457  short-chain dehydrogenase/reductase SDR  34.84 
 
 
238 aa  83.6  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.644121  normal 
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  37.33 
 
 
266 aa  83.2  0.000000000000002  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  33.11 
 
 
262 aa  82.4  0.000000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_009338  Mflv_3050  short chain dehydrogenase  37.58 
 
 
295 aa  81.3  0.000000000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0325921  normal  0.678519 
 
 
-
 
NC_009338  Mflv_2469  short-chain dehydrogenase/reductase SDR  36 
 
 
249 aa  80.5  0.00000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3735  short chain dehydrogenase  34.67 
 
 
281 aa  80.5  0.00000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1200  short-chain dehydrogenase/reductase SDR  31.45 
 
 
285 aa  79.3  0.00000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1178  short-chain dehydrogenase/reductase SDR  35.1 
 
 
262 aa  79  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4185  short-chain dehydrogenase/reductase SDR  34.67 
 
 
248 aa  78.6  0.00000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38260  short-chain alcohol dehydrogenase  31.64 
 
 
305 aa  78.2  0.00000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.913124  normal 
 
 
-
 
NC_008639  Cpha266_1636  short-chain dehydrogenase/reductase SDR  33.12 
 
 
233 aa  77.8  0.00000000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1508  short-chain dehydrogenase/reductase SDR  33.77 
 
 
233 aa  77.8  0.00000000000009  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3742  short-chain dehydrogenase/reductase SDR  34 
 
 
260 aa  77  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.071685 
 
 
-
 
NC_008463  PA14_12680  short chain dehydrogenase  34.67 
 
 
278 aa  77.4  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3826  short chain dehydrogenase  33.33 
 
 
234 aa  76.3  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.273342  n/a   
 
 
-
 
NC_007333  Tfu_1700  short chain dehydrogenase  35.1 
 
 
301 aa  76.6  0.0000000000002  Thermobifida fusca YX  Bacteria  normal  0.354354  n/a   
 
 
-
 
NC_008545  Bcen2424_6847  short-chain dehydrogenase/reductase SDR  31.06 
 
 
236 aa  76.6  0.0000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5417  short-chain dehydrogenase/reductase SDR  36.15 
 
 
306 aa  75.9  0.0000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.256379  normal 
 
 
-
 
NC_008726  Mvan_3477  short chain dehydrogenase  34.9 
 
 
292 aa  75.9  0.0000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.382288  normal 
 
 
-
 
NC_007778  RPB_4257  Short-chain dehydrogenase/reductase SDR  33.77 
 
 
262 aa  75.1  0.0000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0797349  normal 
 
 
-
 
NC_009921  Franean1_2974  short-chain dehydrogenase/reductase SDR  34.87 
 
 
254 aa  75.1  0.0000000000006  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1566  short chain dehydrogenase  30.11 
 
 
267 aa  75.1  0.0000000000006  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6920  short-chain dehydrogenase/reductase SDR  37.75 
 
 
309 aa  74.7  0.0000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0228  short-chain dehydrogenase/reductase SDR  32.45 
 
 
306 aa  74.3  0.0000000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0776  short-chain dehydrogenase/reductase SDR  36.77 
 
 
256 aa  73.9  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1531  3-oxoacyl-[acyl-carrier-protein] reductase  32.26 
 
 
249 aa  74.3  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.356437 
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  34.68 
 
 
241 aa  73.9  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_00620  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  36.24 
 
 
260 aa  72.4  0.000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.297652  n/a   
 
 
-
 
NC_013131  Caci_0088  short-chain dehydrogenase/reductase SDR  34.21 
 
 
315 aa  72.8  0.000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.152071 
 
 
-
 
NC_009921  Franean1_3371  short-chain dehydrogenase/reductase SDR  33.55 
 
 
282 aa  72.8  0.000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1610  short-chain dehydrogenase/reductase SDR  32.47 
 
 
232 aa  72.4  0.000000000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1453  short-chain dehydrogenase/reductase SDR  36.13 
 
 
252 aa  72.4  0.000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.950748  normal 
 
 
-
 
NC_014230  CA2559_10628  short chain dehydrogenase  29.03 
 
 
239 aa  72  0.000000000005  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.10817  n/a   
 
 
-
 
NC_010551  BamMC406_1205  short-chain dehydrogenase/reductase SDR  34.62 
 
 
250 aa  72  0.000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0032  short-chain dehydrogenase/reductase SDR  31.01 
 
 
252 aa  71.6  0.000000000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1117  short-chain dehydrogenase/reductase SDR  33.76 
 
 
233 aa  71.6  0.000000000006  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000223483  normal  0.996665 
 
 
-
 
NC_007794  Saro_1561  short chain dehydrogenase  32.96 
 
 
516 aa  71.2  0.000000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.636243  n/a   
 
 
-
 
NC_008146  Mmcs_3711  short-chain dehydrogenase/reductase SDR  32 
 
 
247 aa  70.5  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3784  short-chain dehydrogenase/reductase SDR  32 
 
 
247 aa  70.5  0.00000000001  Mycobacterium sp. KMS  Bacteria  normal  0.513657  normal  0.265032 
 
 
-
 
NC_009077  Mjls_3724  short-chain dehydrogenase/reductase SDR  32 
 
 
247 aa  70.5  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1872  3-oxoacyl-(acyl-carrier-protein) reductase  38.31 
 
 
241 aa  70.1  0.00000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.105262 
 
 
-
 
NC_007796  Mhun_2367  short-chain dehydrogenase/reductase SDR  29.7 
 
 
272 aa  70.1  0.00000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.264463 
 
 
-
 
NC_008044  TM1040_0427  sorbitol dehydrogenase  33.97 
 
 
256 aa  70.1  0.00000000002  Ruegeria sp. TM1040  Bacteria  normal  0.279316  normal  0.619878 
 
 
-
 
NC_010623  Bphy_3470  short-chain dehydrogenase/reductase SDR  33.97 
 
 
250 aa  70.1  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0741311 
 
 
-
 
NC_013172  Bfae_15900  3-oxoacyl-(acyl-carrier-protein) reductase  36.42 
 
 
241 aa  69.7  0.00000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.166031  n/a   
 
 
-
 
NC_009901  Spea_2148  short-chain dehydrogenase/reductase SDR  33.54 
 
 
247 aa  70.1  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1258  short-chain dehydrogenase/reductase SDR  33.55 
 
 
248 aa  69.3  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  hitchhiker  0.000465819 
 
 
-
 
NC_011004  Rpal_4152  short-chain dehydrogenase/reductase SDR  36.25 
 
 
257 aa  69.7  0.00000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3251  short-chain dehydrogenase/reductase SDR  35.76 
 
 
243 aa  69.3  0.00000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.433437  normal 
 
 
-
 
NC_007777  Francci3_3801  short-chain dehydrogenase/reductase SDR  35.15 
 
 
277 aa  68.9  0.00000000004  Frankia sp. CcI3  Bacteria  normal  0.0429275  normal 
 
 
-
 
NC_013730  Slin_1831  short-chain dehydrogenase/reductase SDR  33.96 
 
 
259 aa  68.9  0.00000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.303734  normal  0.393919 
 
 
-
 
NC_013595  Sros_4576  short-chain dehydrogenase/reductase SDR  33.11 
 
 
248 aa  68.6  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.113643 
 
 
-
 
NC_013739  Cwoe_5919  short-chain dehydrogenase/reductase SDR  36.97 
 
 
295 aa  68.6  0.00000000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2006  short-chain dehydrogenase/reductase SDR  35 
 
 
274 aa  68.9  0.00000000005  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.157395 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  33.77 
 
 
261 aa  68.6  0.00000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0818  short chain dehydrogenase  32.68 
 
 
242 aa  68.6  0.00000000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11380  3-ketoacyl-(acyl-carrier-protein) reductase  36.54 
 
 
247 aa  68.6  0.00000000006  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.833794 
 
 
-
 
NC_010087  Bmul_5503  short chain dehydrogenase  36.18 
 
 
327 aa  68.2  0.00000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.148603  normal  0.0783647 
 
 
-
 
NC_011004  Rpal_1300  short-chain dehydrogenase/reductase SDR  31.13 
 
 
262 aa  67.8  0.00000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4404  short-chain dehydrogenase/reductase SDR  33.53 
 
 
261 aa  67.8  0.00000000009  Variovorax paradoxus S110  Bacteria  normal  0.385192  n/a   
 
 
-
 
NC_010002  Daci_1543  3-hydroxybutyrate dehydrogenase  31.41 
 
 
260 aa  67.8  0.00000000009  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3964  short-chain dehydrogenase/reductase SDR  32.24 
 
 
249 aa  67.8  0.00000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2450  short chain dehydrogenase  35 
 
 
248 aa  67  0.0000000001  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.00157623  n/a   
 
 
-
 
NC_009439  Pmen_1244  short chain dehydrogenase  32.9 
 
 
270 aa  67.4  0.0000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.542872  normal  0.404553 
 
 
-
 
NC_007908  Rfer_0271  short-chain dehydrogenase/reductase SDR  32.93 
 
 
254 aa  67.4  0.0000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3883  short-chain dehydrogenase/reductase SDR  38.79 
 
 
248 aa  67.4  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.445893 
 
 
-
 
NC_011138  MADE_01666  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  33.13 
 
 
258 aa  67  0.0000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0141372  n/a   
 
 
-
 
NC_013926  Aboo_0217  short-chain dehydrogenase/reductase SDR  35.48 
 
 
240 aa  67.4  0.0000000001  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_007348  Reut_B4775  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  36.71 
 
 
249 aa  66.6  0.0000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009954  Cmaq_1757  3-ketoacyl-(acyl-carrier-protein) reductase  29.61 
 
 
302 aa  67  0.0000000002  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_008061  Bcen_4725  short-chain dehydrogenase/reductase SDR  38.79 
 
 
248 aa  67  0.0000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3305  short-chain dehydrogenase/reductase SDR  34 
 
 
268 aa  66.6  0.0000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.552464 
 
 
-
 
NC_008148  Rxyl_3047  short-chain dehydrogenase/reductase SDR  32.96 
 
 
262 aa  66.6  0.0000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3531  short chain dehydrogenase  36 
 
 
250 aa  66.2  0.0000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0732  short-chain dehydrogenase/reductase SDR  38.61 
 
 
249 aa  67  0.0000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3638  short-chain dehydrogenase/reductase SDR  38.79 
 
 
248 aa  67  0.0000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0316279  normal 
 
 
-
 
NC_008739  Maqu_4109  short-chain dehydrogenase/reductase SDR  30.3 
 
 
234 aa  66.6  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0979  short-chain dehydrogenase/reductase SDR  31.28 
 
 
246 aa  66.6  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0413  short chain dehydrogenase/reductase family oxidoreductase  33.08 
 
 
274 aa  66.2  0.0000000003  Chlorobium luteolum DSM 273  Bacteria  normal  0.642509  normal 
 
 
-
 
NC_010468  EcolC_1649  short-chain dehydrogenase/reductase SDR  33.16 
 
 
250 aa  66.2  0.0000000003  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.0000150236 
 
 
-
 
NC_008463  PA14_21640  short chain dehydrogenase  32.26 
 
 
270 aa  66.2  0.0000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1954  short chain dehydrogenase/reductase family oxidoreductase  34.55 
 
 
250 aa  65.9  0.0000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2667  short-chain dehydrogenase/reductase SDR  33.11 
 
 
230 aa  66.2  0.0000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.224966  normal  0.349225 
 
 
-
 
NC_008709  Ping_0989  short-chain dehydrogenase/reductase SDR  28.03 
 
 
226 aa  65.9  0.0000000003  Psychromonas ingrahamii 37  Bacteria  hitchhiker  0.00421455  normal  0.304991 
 
 
-
 
NC_010338  Caul_4867  short-chain dehydrogenase/reductase SDR  36.28 
 
 
281 aa  66.2  0.0000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
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