Gene Rpal_3964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3964 
Symbol 
ID6411645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4255375 
End bp4256124 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content66% 
IMG OID642713845 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001992935 
Protein GI192292330 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGCA TCGACCTCAA CCACCGCTGC GCCGTGGTCA CCGGCGGGGC GCAGGGCATC 
GGGCGGGCGA TCGCGGAGCG GTTCGTCGCG TCCGGCGCCA AGGTGGCGCT GTGGGACCAC
GACGTCGCGC TGGCCGAGCG GACCGCCAAG GAGATCGGCG ACGATGCGAC GATCGCGGTG
GCAGTCGACG TCACCGATCC GTCCGCGGTC GATCGCGCAC GCGATGCAAC CCTGCAGGCG
TTCGGCAAGA TCGATATCCT GGTCAACAAT GCAGGGATCG CCGGCGTCAA CAAGACCGTG
TGGGAGACCG ACTACGCCGA GTGGCAGCGG GTGTTGAAGC TGAACCTCGA CGGCCCGTTC
CTGTGCTGCA AGTCGGTGGT GCCGTCGATG ATCGCGCATA AATACGGCCG CATCGTCAAC
ATCGCCTCGA TCGCCGGCAA GGAAGGCAAC CCGAACGCCG CGCACTACTC GGCCTCGAAG
GCCGGCGTGA TCGCGCTGAC GAAATCGCTC GGCAAGGAGC TGGCGGCCTA CGACATCGCC
GTCAACGCGG TGACGCCGGC CGCGGCACGC ACGGCGATCT TCGACCAGAT GACGCAGACT
CACATCGACT TCATGCTGTC GAAGATCCCG AAGGGCCGCT TCGTGCTGGT CGAAGAAGTC
GCCGCCCTGG TGGCGTGGCT GGCGTCGGAA GACTGCGCGT TCTCTACCGG CGCGGTGTTC
GACATTTCAG GCGGACGCGC GACGTATTGA
 
Protein sequence
MNSIDLNHRC AVVTGGAQGI GRAIAERFVA SGAKVALWDH DVALAERTAK EIGDDATIAV 
AVDVTDPSAV DRARDATLQA FGKIDILVNN AGIAGVNKTV WETDYAEWQR VLKLNLDGPF
LCCKSVVPSM IAHKYGRIVN IASIAGKEGN PNAAHYSASK AGVIALTKSL GKELAAYDIA
VNAVTPAAAR TAIFDQMTQT HIDFMLSKIP KGRFVLVEEV AALVAWLASE DCAFSTGAVF
DISGGRATY