Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3964 |
Symbol | |
ID | 6411645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4255375 |
End bp | 4256124 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642713845 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001992935 |
Protein GI | 192292330 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACAGCA TCGACCTCAA CCACCGCTGC GCCGTGGTCA CCGGCGGGGC GCAGGGCATC GGGCGGGCGA TCGCGGAGCG GTTCGTCGCG TCCGGCGCCA AGGTGGCGCT GTGGGACCAC GACGTCGCGC TGGCCGAGCG GACCGCCAAG GAGATCGGCG ACGATGCGAC GATCGCGGTG GCAGTCGACG TCACCGATCC GTCCGCGGTC GATCGCGCAC GCGATGCAAC CCTGCAGGCG TTCGGCAAGA TCGATATCCT GGTCAACAAT GCAGGGATCG CCGGCGTCAA CAAGACCGTG TGGGAGACCG ACTACGCCGA GTGGCAGCGG GTGTTGAAGC TGAACCTCGA CGGCCCGTTC CTGTGCTGCA AGTCGGTGGT GCCGTCGATG ATCGCGCATA AATACGGCCG CATCGTCAAC ATCGCCTCGA TCGCCGGCAA GGAAGGCAAC CCGAACGCCG CGCACTACTC GGCCTCGAAG GCCGGCGTGA TCGCGCTGAC GAAATCGCTC GGCAAGGAGC TGGCGGCCTA CGACATCGCC GTCAACGCGG TGACGCCGGC CGCGGCACGC ACGGCGATCT TCGACCAGAT GACGCAGACT CACATCGACT TCATGCTGTC GAAGATCCCG AAGGGCCGCT TCGTGCTGGT CGAAGAAGTC GCCGCCCTGG TGGCGTGGCT GGCGTCGGAA GACTGCGCGT TCTCTACCGG CGCGGTGTTC GACATTTCAG GCGGACGCGC GACGTATTGA
|
Protein sequence | MNSIDLNHRC AVVTGGAQGI GRAIAERFVA SGAKVALWDH DVALAERTAK EIGDDATIAV AVDVTDPSAV DRARDATLQA FGKIDILVNN AGIAGVNKTV WETDYAEWQR VLKLNLDGPF LCCKSVVPSM IAHKYGRIVN IASIAGKEGN PNAAHYSASK AGVIALTKSL GKELAAYDIA VNAVTPAAAR TAIFDQMTQT HIDFMLSKIP KGRFVLVEEV AALVAWLASE DCAFSTGAVF DISGGRATY
|
| |