Gene BamMC406_1205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1205 
Symbol 
ID6177948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1332368 
End bp1333120 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content66% 
IMG OID641680961 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001807912 
Protein GI172060260 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAGA TCGAATTGAG CGGCCGAGTG GTCGTGATCA CGGGCGGCGC ACGCGGCATC 
GGCTATGCGG CCGCGCAGCG GGCGCTGCGC TCGGGGGCGG CGGTGTCGCT GTGGGACGTC
GACGGGGAGC GGCTCGCGCG CAGCCAGCGC GAACTGTCGG AACTCGGCAC CGTATCGACC
GTCGTCGTCG AATTGACCGA TGAAGCATCC GTCGACGCCG CGGCCACGGC CACATTCGAG
CGGCACGGTG CGATCGACGT GCTGATCAAC AGCGCCGGTA TCACGGGGGG TAACGGTCTG
ACGTGGGAAC TGCCGCCCGA TGTCTGGCGC CGCGTGATCG ACGTGAACCT GATCGGCTCG
TATCTAACGT GCCGCGCCGT GGTGCCGCGA ATGCTCGAGA AGGGCTACGG CCGCATCGTC
AACATCGCAT CGGTGGCCGG CAAGGAAGGC AATCCGACCG CATCGCACTA CAGTGCCTCG
AAGGCCGGCC TGATCGGCCT CACGAAATCG CTCGGCAAGG AGCTGGCGAC CCGCGGCATC
CTCGTGAATG CCGTCACGCC GGCGGCAGCG AAGACCGAGA TCTTCGACTC GATGTCGCAG
CAGCATATCG ACTACATGCT GTCGAAGATA CCGATGAACC GCTTTCTGAT GCCGGAAGAG
GCGGCCTCGC TGATCCTGTG GCTCGCGTCC GAGGATTGCG CATTCAGCAC CGGGGCCGTA
TTCGACCTGT CGGGCGGCCG CGCCACCTAT TGA
 
Protein sequence
MNQIELSGRV VVITGGARGI GYAAAQRALR SGAAVSLWDV DGERLARSQR ELSELGTVST 
VVVELTDEAS VDAAATATFE RHGAIDVLIN SAGITGGNGL TWELPPDVWR RVIDVNLIGS
YLTCRAVVPR MLEKGYGRIV NIASVAGKEG NPTASHYSAS KAGLIGLTKS LGKELATRGI
LVNAVTPAAA KTEIFDSMSQ QHIDYMLSKI PMNRFLMPEE AASLILWLAS EDCAFSTGAV
FDLSGGRATY