| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3801 |
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| Symbol | |
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| ID | 3905549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4559328 |
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| End bp | 4560161 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637881127 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_482880 |
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| Protein GI | 86742480 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0429275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTGGCGAC GACCGGGACA CTCGACGACC GGGACACTCG GGGGGCCTCT CACGCGTGCG
CGTCAGGACG TGGCAGTGTC CTTAGTCATG ACCGAGTGCA GCGACAAGGT CGCGCTCCTG
ACCGGAGCGG GATCCGGCAT CGGTGCCGCC TGCGCCCGCC GACTGGCGAG GGCGGGCGCC
CGGGTCGTCG CCACCGACCT CGACGCGCAC ACTGTCAAGG AGGTGGTGGC GACGATCGAG
GACGGTGGCG GGGAGGCGCT CGCCCTGGAG GCGGACGTCA CCGATCCCGA TTCGCTCGAA
CGCGCCGTCC AGGTCACCGT CGGCACCTTC GGACGGCTGG ACCTGGCGGT GAACAACGCG
GGAGTGAGCG CGGGGCGCGA GCCGGTGGAG ACCACCCCGG CGCAGGACTG GCAGCGGGTG
CTGGACGTCA ACCTCTCCGG CGTCTTCTAC AGCATGCGGG CCGAGATCAC GGCGATGCTG
CGCGGCGACG GAGGCTCGAT CGTCAACATG GCCTCGGTGC TCGGGGTGGT CGGGTTCGCC
GGGTCGGCGC CCTACGTCGC CGCGAAGCAC GGGGTCATCG GGCTGACCAA GACGGCCGCC
CTGGACTACG CCACCCGCGG CATCCGAGTG AACGCGGTGG CGCCGGGCTT CGTGGACACC
CCGCTGCTGC ATGTCGACGG CCGGCCGCGG CGCGGAGCCG CGCTGTTCTC GCCGATCAAC
CGGCTGGGCA CGGTCGACGA GGTGGCCGAG GTCGTCGTCT TCCTGCTGTC CGACCGGGCC
TCCCTGGTCA CGGGCAGCGT CTATCTGGCC GACGGCGGCA TGGCCGCCCG CTGA
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| Protein sequence | MWRRPGHSTT GTLGGPLTRA RQDVAVSLVM TECSDKVALL TGAGSGIGAA CARRLARAGA
RVVATDLDAH TVKEVVATIE DGGGEALALE ADVTDPDSLE RAVQVTVGTF GRLDLAVNNA
GVSAGREPVE TTPAQDWQRV LDVNLSGVFY SMRAEITAML RGDGGSIVNM ASVLGVVGFA
GSAPYVAAKH GVIGLTKTAA LDYATRGIRV NAVAPGFVDT PLLHVDGRPR RGAALFSPIN
RLGTVDEVAE VVVFLLSDRA SLVTGSVYLA DGGMAAR
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