| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1300 |
|---|
| Symbol | |
|---|
| ID | 6408957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1369230 |
|---|
| End bp | 1370018 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642711199 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001990315 |
|---|
| Protein GI | 192289710 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAT CCTCGCCCCA TGTCGCGCTG GTAACCGGAG CCGCTCGCGG CATCGGACTC
GCTGCGGCCA AGCGCTTTCT CGCCGACGGC TGGTCGGTGG CGCTGCTCGA CCGCGACGAT
GACGGGCTGC GCGCCGCAAT GCAGGCGTTG GCCCTGCCCG AACGCACCAT CGCGCTGCAT
TGTGACGTCG CCGATCGCGG GTCGGTCGCC CGCGACATCG CTGCGGTCAC TGACCGGTTC
GGACGGCTCG ATGCGCTCGT CAACAACGCC GGCATCGCGG TGTTCAAGCC GCTGATGGAG
ACGACGCCGG ACGAATGGCA GCGGGTGATG GACGTCAACC TGACCGGTCC GTTCCTGATG
ACCCAGGCCG CGGTGCCGCT GATGCGCGAC TCCGGCGGGG GCGCGATCGT CAACATCACG
TCGATCTCGT CGCTCCGTGC CTCGACCCTG CGCGTCGCCT ACGGGTCGAG CAAAGCCGGG
CTGGCGCACT TCACCAAGCA GTGCGCGGTC GAACTCGCCG CGCTCGGCAT CCGCGTCAAC
GGCGTTGCGC CCGGTCCGGT CGACACCGCA ATGGCCAAGC AGGTCCACAC TGCGGACATC
CGGTCCGACT ATCGCGACGC GATTCCGATG GCACGCTACG GCCTCGAGGA GGAGCTGGCG
GAGGCCATCT TCTTCCTGTG CAGCGATCGC GCCAGCTACA TCACCGGACA AATTCTAGCG
GTGGACGGCG GCTTCGACGC CGCCGGCATC GGCCTGCCGT CGCTGCGCGG TGAACGCAAA
AATAGTTAG
|
|---|
| Protein sequence | MTASSPHVAL VTGAARGIGL AAAKRFLADG WSVALLDRDD DGLRAAMQAL ALPERTIALH
CDVADRGSVA RDIAAVTDRF GRLDALVNNA GIAVFKPLME TTPDEWQRVM DVNLTGPFLM
TQAAVPLMRD SGGGAIVNIT SISSLRASTL RVAYGSSKAG LAHFTKQCAV ELAALGIRVN
GVAPGPVDTA MAKQVHTADI RSDYRDAIPM ARYGLEEELA EAIFFLCSDR ASYITGQILA
VDGGFDAAGI GLPSLRGERK NS
|
|---|
| |