| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4404 |
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| Symbol | |
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| ID | 7974078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4646870 |
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| End bp | 4647655 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794993 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002946281 |
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| Protein GI | 239817371 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.385192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATCG AAGGACAAGC CGCACTCGTG ACCGGCGGCG CATCGGGCCT GGGCGAAGCC
ACCGCGCGCG AACTCGCGCG GCTGGGCGCC AAGGTGGCGG TGCTCGACCG CAATGCGGAG
CTCGCCGCCA AGGTGGCCGC GGAGATCGGC GAAGAATTTG GCGACGGCTG CGCCGTGGCG
TGCGTCTGCG ACATCACCGA CACCGAGAGC GTCAATGCCG CGCTCGACAA GGCCGCCGCC
GCCCACGGCA CCGCGCGCAT CCTGATGAAC GTGGCGGGCA TCGGCAGCGC CAAGCGCATC
GTCGGCAAGG ACGGCAATCC GGCACCGCTC GAAGACTTCG TGCGCGTGGT CAACATCAAC
CTGATCGGCG GCTACAACAT GGCGCGCCTC TTTGCGGCAC GCTGCGCCAA GCTGGAGGCA
TTGGACAACG GCGAGAAGGG CGTGATGCTC TTCACCGCCT CCGTCGCGGC CTTCGACGGC
CAGGTGGGCC AGCAGGCCTA CAGCGCCTCC AAGGGCGGCC TCGTGGGCAT GACGCTGCCG
ATGGCGCGCG ACCTCGCGCA GCACGCGATC CGCGTCTGCA CCGTGGCGCC GGGCCTCTTT
GCCACGCCGC TTTTGATGGA ACTGCCCGAA GCCGTGCAGC AATCGCTGGC CGCATCGATC
CCGTTTCCGC CGCGCCTGGG CAAGCCTTCG GAATTTGCCG AGCTAGCCTG CCACATCGTG
ACCAATGGCC ACCTCAACGG CGAAGTCATT CGCCTCGACG GCGCCCTGCG CATGGCGCCG
CGCTGA
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| Protein sequence | MKIEGQAALV TGGASGLGEA TARELARLGA KVAVLDRNAE LAAKVAAEIG EEFGDGCAVA
CVCDITDTES VNAALDKAAA AHGTARILMN VAGIGSAKRI VGKDGNPAPL EDFVRVVNIN
LIGGYNMARL FAARCAKLEA LDNGEKGVML FTASVAAFDG QVGQQAYSAS KGGLVGMTLP
MARDLAQHAI RVCTVAPGLF ATPLLMELPE AVQQSLAASI PFPPRLGKPS EFAELACHIV
TNGHLNGEVI RLDGALRMAP R
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