More than 300 homologs were found in PanDaTox collection
for query gene Ppha_1610 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_1610  short-chain dehydrogenase/reductase SDR  100 
 
 
232 aa  478  1e-134  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1636  short-chain dehydrogenase/reductase SDR  76.39 
 
 
233 aa  380  1e-104  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1508  short-chain dehydrogenase/reductase SDR  75.76 
 
 
233 aa  369  1e-101  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1031  short-chain dehydrogenase/reductase SDR  74.25 
 
 
233 aa  367  1e-101  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0924  short chain dehydrogenase/reductase family oxidoreductase  76.29 
 
 
232 aa  365  1e-100  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1309  short chain dehydrogenase/reductase family oxidoreductase  75.98 
 
 
236 aa  363  1e-99  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_1458  short-chain dehydrogenase/reductase SDR  71.86 
 
 
233 aa  342  2e-93  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2667  short-chain dehydrogenase/reductase SDR  59.48 
 
 
230 aa  275  4e-73  Conexibacter woesei DSM 14684  Bacteria  normal  0.224966  normal  0.349225 
 
 
-
 
NC_013440  Hoch_6315  short-chain dehydrogenase/reductase SDR  48.46 
 
 
228 aa  195  5.000000000000001e-49  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0989  short-chain dehydrogenase/reductase SDR  41.23 
 
 
226 aa  179  2.9999999999999997e-44  Psychromonas ingrahamii 37  Bacteria  hitchhiker  0.00421455  normal  0.304991 
 
 
-
 
NC_008739  Maqu_4109  short-chain dehydrogenase/reductase SDR  42.73 
 
 
234 aa  177  1e-43  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5340  short-chain dehydrogenase/reductase SDR  49.27 
 
 
209 aa  174  9.999999999999999e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00919  Short-chain alcohol dehydrogenase of unknown specificity  41.33 
 
 
230 aa  170  2e-41  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1432  short-chain dehydrogenase/reductase SDR  42.98 
 
 
226 aa  169  3e-41  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.411004  n/a   
 
 
-
 
NC_013131  Caci_3280  short-chain dehydrogenase/reductase SDR  41.3 
 
 
232 aa  160  1e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  37.23 
 
 
231 aa  155  4e-37  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  37.23 
 
 
231 aa  155  4e-37  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_012791  Vapar_0808  short-chain dehydrogenase/reductase SDR  38.49 
 
 
252 aa  155  5.0000000000000005e-37  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  38.43 
 
 
230 aa  154  1e-36  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_33490  short-chain alcohol dehydrogenase  37.55 
 
 
247 aa  148  8e-35  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.343117  normal  0.392445 
 
 
-
 
NC_011884  Cyan7425_1650  short-chain dehydrogenase/reductase SDR  36.33 
 
 
254 aa  143  3e-33  Cyanothece sp. PCC 7425  Bacteria  normal  0.206138  normal 
 
 
-
 
NC_013757  Gobs_3104  short-chain dehydrogenase/reductase SDR  35.51 
 
 
252 aa  143  3e-33  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0501  short-chain dehydrogenase/reductase SDR  39 
 
 
244 aa  142  5e-33  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00365065 
 
 
-
 
NC_011726  PCC8801_0488  short-chain dehydrogenase/reductase SDR  39 
 
 
244 aa  142  5e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_2470  Short-chain dehydrogenase/reductase SDR  36.73 
 
 
244 aa  140  1.9999999999999998e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4853  short-chain dehydrogenase/reductase SDR  35.1 
 
 
248 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.154391  normal  0.241568 
 
 
-
 
NC_010338  Caul_4845  short-chain dehydrogenase/reductase SDR  35.66 
 
 
252 aa  138  8.999999999999999e-32  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4578  short-chain dehydrogenase/reductase SDR  36.33 
 
 
264 aa  137  1e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3865  short-chain dehydrogenase/reductase SDR  35.92 
 
 
247 aa  137  1e-31  Serratia proteamaculans 568  Bacteria  normal  0.269971  normal 
 
 
-
 
NC_007760  Adeh_3217  short-chain dehydrogenase/reductase SDR  34.43 
 
 
253 aa  135  4e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1007  short-chain dehydrogenase/reductase SDR  32.52 
 
 
245 aa  135  6.0000000000000005e-31  Sphingomonas wittichii RW1  Bacteria  normal  0.553727  normal  0.0273902 
 
 
-
 
NC_007953  Bxe_C0635  putative short-chain dehydrogenase/reductase  36.78 
 
 
246 aa  135  6.0000000000000005e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.660542  normal  0.0297002 
 
 
-
 
NC_008312  Tery_0205  short-chain dehydrogenase/reductase SDR  32.93 
 
 
257 aa  135  6.0000000000000005e-31  Trichodesmium erythraeum IMS101  Bacteria  normal  0.76225  normal  0.242071 
 
 
-
 
NC_013422  Hneap_0484  short-chain dehydrogenase/reductase SDR  33.6 
 
 
266 aa  134  8e-31  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007412  Ava_C0112  NAD-dependent epimerase/dehydratase  37.45 
 
 
244 aa  134  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2186  short-chain dehydrogenase/reductase SDR  33.33 
 
 
248 aa  134  9.999999999999999e-31  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0361624 
 
 
-
 
NC_009425  Ent638_4222  short-chain dehydrogenase/reductase SDR  35.98 
 
 
242 aa  134  9.999999999999999e-31  Enterobacter sp. 638  Bacteria  normal  0.186526  normal 
 
 
-
 
NC_010087  Bmul_5635  short-chain dehydrogenase/reductase SDR  34.43 
 
 
247 aa  134  1.9999999999999998e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3599  short-chain dehydrogenase/reductase SDR  31.02 
 
 
256 aa  133  1.9999999999999998e-30  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_3251  short-chain dehydrogenase/reductase SDR  35.92 
 
 
259 aa  132  3e-30  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_009439  Pmen_2896  short-chain dehydrogenase/reductase SDR  36.21 
 
 
240 aa  132  3.9999999999999996e-30  Pseudomonas mendocina ymp  Bacteria  normal  0.148916  normal 
 
 
-
 
NC_010501  PputW619_3131  short-chain dehydrogenase/reductase SDR  33.6 
 
 
245 aa  132  6e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2737  short-chain dehydrogenase/reductase SDR  34.84 
 
 
245 aa  130  1.0000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013745  Htur_4636  short-chain dehydrogenase/reductase SDR  33.47 
 
 
254 aa  130  1.0000000000000001e-29  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_007005  Psyr_0194  Short-chain dehydrogenase/reductase SDR  35.63 
 
 
244 aa  130  1.0000000000000001e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp0362  hypothetical protein  33.2 
 
 
257 aa  130  2.0000000000000002e-29  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0338  hypothetical protein  33.2 
 
 
257 aa  130  2.0000000000000002e-29  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_3335  short-chain dehydrogenase/reductase SDR  34.71 
 
 
246 aa  130  2.0000000000000002e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2185  short-chain dehydrogenase/reductase SDR  38.82 
 
 
237 aa  130  2.0000000000000002e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.756927  n/a   
 
 
-
 
NC_013595  Sros_8710  Short-chain alcohol dehydrogenase of unknown specificity-like protein  38.46 
 
 
258 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0554  ribitol 2-dehydrogenase  33.33 
 
 
241 aa  130  2.0000000000000002e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2888  Short-chain dehydrogenase/reductase SDR  32.11 
 
 
257 aa  129  4.0000000000000003e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0119499 
 
 
-
 
NC_013730  Slin_4558  short-chain dehydrogenase/reductase SDR  35 
 
 
240 aa  129  4.0000000000000003e-29  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00293136  normal 
 
 
-
 
NC_008254  Meso_3902  short-chain dehydrogenase/reductase SDR  34.3 
 
 
246 aa  128  6e-29  Chelativorans sp. BNC1  Bacteria  normal  0.809389  n/a   
 
 
-
 
NC_013132  Cpin_4381  short-chain dehydrogenase/reductase SDR  35.86 
 
 
248 aa  128  6e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.297747  hitchhiker  0.00314525 
 
 
-
 
NC_010085  Nmar_1786  short-chain dehydrogenase/reductase SDR  35.92 
 
 
246 aa  127  1.0000000000000001e-28  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008609  Ppro_1861  short-chain dehydrogenase/reductase SDR  32.79 
 
 
252 aa  127  2.0000000000000002e-28  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_1627  oxidoreductase  32.79 
 
 
255 aa  126  3e-28  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0676  short-chain dehydrogenase/reductase SDR  34.26 
 
 
254 aa  126  4.0000000000000003e-28  Frankia sp. CcI3  Bacteria  hitchhiker  0.00917144  normal  0.0792915 
 
 
-
 
NC_008751  Dvul_1374  short-chain dehydrogenase/reductase SDR  34.04 
 
 
253 aa  125  5e-28  Desulfovibrio vulgaris DP4  Bacteria  normal  0.542817  normal  0.89387 
 
 
-
 
NC_013730  Slin_0457  short-chain dehydrogenase/reductase SDR  35.04 
 
 
238 aa  125  8.000000000000001e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.644121  normal 
 
 
-
 
NC_013595  Sros_8706  short-chain dehydrogenase/reductase SDR  34.26 
 
 
255 aa  125  8.000000000000001e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0951  short-chain dehydrogenase/reductase SDR  34.68 
 
 
261 aa  124  1e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1117  short-chain dehydrogenase/reductase SDR  32.91 
 
 
233 aa  124  1e-27  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000223483  normal  0.996665 
 
 
-
 
NC_009621  Smed_5216  short-chain dehydrogenase/reductase SDR  35.37 
 
 
249 aa  123  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3907  short-chain dehydrogenase/reductase SDR  36.21 
 
 
246 aa  123  3e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.267776 
 
 
-
 
NC_010803  Clim_2370  short-chain dehydrogenase/reductase SDR  33.86 
 
 
253 aa  123  3e-27  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  38.07 
 
 
264 aa  122  4e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_014230  CA2559_06330  oxidoreductase  35.8 
 
 
243 aa  122  5e-27  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.646831  n/a   
 
 
-
 
NC_008146  Mmcs_1552  short-chain dehydrogenase/reductase SDR  32.64 
 
 
246 aa  122  5e-27  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1575  short-chain dehydrogenase/reductase SDR  32.64 
 
 
246 aa  122  5e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008243  Meso_4514  short-chain dehydrogenase/reductase SDR  33.61 
 
 
257 aa  122  6e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2262  short-chain dehydrogenase/reductase SDR  33.76 
 
 
244 aa  122  7e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.0000989308  normal 
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  35.39 
 
 
241 aa  122  7e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  38.58 
 
 
264 aa  121  8e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7375  ribitol 2-dehydrogenase  32.91 
 
 
242 aa  121  8e-27  Agrobacterium vitis S4  Bacteria  normal  0.144533  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  38.58 
 
 
264 aa  121  8e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  38.58 
 
 
264 aa  121  8e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2812  short-chain dehydrogenase/reductase SDR  36.32 
 
 
257 aa  121  9.999999999999999e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.197802 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  38.07 
 
 
264 aa  121  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  38.07 
 
 
264 aa  120  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0979  short-chain dehydrogenase/reductase SDR  32.23 
 
 
254 aa  121  9.999999999999999e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.495407 
 
 
-
 
NC_011138  MADE_01927  putative oxidoreductase  33.33 
 
 
252 aa  121  9.999999999999999e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.160278  n/a   
 
 
-
 
NC_007760  Adeh_3205  short-chain dehydrogenase/reductase SDR  35.12 
 
 
244 aa  120  9.999999999999999e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2573  short-chain dehydrogenase/reductase SDR  35.92 
 
 
246 aa  121  9.999999999999999e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  37.56 
 
 
264 aa  120  1.9999999999999998e-26  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_008025  Dgeo_0458  short-chain dehydrogenase/reductase SDR  33.94 
 
 
257 aa  120  1.9999999999999998e-26  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.706164 
 
 
-
 
NC_010338  Caul_0159  short-chain dehydrogenase/reductase SDR  33.47 
 
 
249 aa  120  1.9999999999999998e-26  Caulobacter sp. K31  Bacteria  normal  0.410897  normal  0.168063 
 
 
-
 
BN001305  ANIA_05318  hypothetical protein similar to nonribosomal peptide synthetase 10 (Broad)  34.29 
 
 
1270 aa  119  3e-26  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.556036  normal  0.849429 
 
 
-
 
NC_009656  PSPA7_5631  putative short-chain dehydrogenase  33.61 
 
 
253 aa  119  3e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  37.56 
 
 
264 aa  119  3e-26  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2127  Serine 3-dehydrogenase  34.16 
 
 
255 aa  119  4.9999999999999996e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.247906  n/a   
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  37.56 
 
 
264 aa  119  6e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0323  clavaldehyde dehydrogenase  34.43 
 
 
245 aa  118  7e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.869868 
 
 
-
 
NC_007494  RSP_3704  ribitol 2-dehydrogenase  32.63 
 
 
242 aa  118  7.999999999999999e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0194179  n/a   
 
 
-
 
NC_011729  PCC7424_0488  short-chain dehydrogenase/reductase SDR  31.6 
 
 
261 aa  118  9e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007005  Psyr_0602  Short-chain dehydrogenase/reductase SDR  33.2 
 
 
254 aa  117  9.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0114024  normal  0.546802 
 
 
-
 
NC_009050  Rsph17029_3439  short-chain dehydrogenase/reductase SDR  32.63 
 
 
242 aa  117  9.999999999999999e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.432228  normal  0.172145 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  29.48 
 
 
254 aa  117  1.9999999999999998e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_012852  Rleg_6256  short-chain dehydrogenase/reductase SDR  32.49 
 
 
242 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.88898  normal 
 
 
-
 
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