More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_3486 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009074  BURPS668_3546  phenylacetic acid degradation protein paaN  84.1 
 
 
568 aa  944    Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.0000144132  n/a   
 
 
-
 
NC_008835  BMA10229_0931  aldehyde dehydrogenase family protein  83.57 
 
 
568 aa  937    Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00000213032  n/a   
 
 
-
 
NC_010084  Bmul_2851  phenylacetic acid degradation protein paaN  86.04 
 
 
568 aa  962    Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.000000806578  normal  0.567256 
 
 
-
 
NC_009079  BMA10247_A1901  aldehyde dehydrogenase family protein  83.75 
 
 
568 aa  939    Burkholderia mallei NCTC 10247  Bacteria  normal  0.0596942  n/a   
 
 
-
 
NC_010551  BamMC406_0473  phenylacetic acid degradation protein paaN  85.16 
 
 
568 aa  949    Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.0000197597  normal  0.595687 
 
 
-
 
NC_009076  BURPS1106A_3573  phenylacetic acid degradation protein paaN  83.92 
 
 
568 aa  941    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0515  phenylacetic acid degradation protein paaN  86.57 
 
 
568 aa  978    Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000855749  normal  0.271248 
 
 
-
 
NC_006349  BMAA0543  aldehyde dehydrogenase family protein  83.75 
 
 
568 aa  939    Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.000511741  n/a   
 
 
-
 
NC_008542  Bcen2424_0543  phenylacetic acid degradation protein paaN  86.75 
 
 
568 aa  973    Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.0023429  n/a   
 
 
-
 
NC_007348  Reut_B3740  phenylacetic acid degradation protein paaN2  68.88 
 
 
554 aa  793    Ralstonia eutropha JMP134  Bacteria  normal  0.0891249  n/a   
 
 
-
 
NC_010622  Bphy_2689  phenylacetic acid degradation protein paaN  86.86 
 
 
563 aa  986    Burkholderia phymatum STM815  Bacteria  hitchhiker  0.0000855846  normal 
 
 
-
 
NC_007434  BURPS1710b_3564  phenylacetic acid degradation protein paaN  83.92 
 
 
568 aa  942    Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00000332176  n/a   
 
 
-
 
NC_009953  Sare_0307  phenylacetic acid degradation protein paaN  61.91 
 
 
557 aa  637    Salinispora arenicola CNS-205  Bacteria  normal  0.777048  hitchhiker  0.000751962 
 
 
-
 
NC_007510  Bcep18194_A3630  phenylacetic acid degradation protein paaN2  85.87 
 
 
568 aa  973    Burkholderia sp. 383  Bacteria  hitchhiker  0.000000209323  normal  0.623158 
 
 
-
 
NC_010681  Bphyt_3486  phenylacetic acid degradation protein paaN  100 
 
 
566 aa  1153    Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000217108  hitchhiker  0.00037416 
 
 
-
 
NC_007651  BTH_I2900  phenylacetic acid degradation protein paaN  83.75 
 
 
568 aa  953    Burkholderia thailandensis E264  Bacteria  hitchhiker  0.0000137012  n/a   
 
 
-
 
NC_007951  Bxe_A0470  phenylacetic acid ring-opening protein (PaaZ')  95.23 
 
 
566 aa  1039    Burkholderia xenovorans LB400  Bacteria  normal  0.0566882  normal 
 
 
-
 
NC_009380  Strop_0265  phenylacetic acid degradation protein paaN  61.73 
 
 
561 aa  647    Salinispora tropica CNB-440  Bacteria  normal  hitchhiker  0.000588843 
 
 
-
 
NC_008784  BMASAVP1_0634  aldehyde dehydrogenase family protein  83.75 
 
 
568 aa  939    Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.000013485  n/a   
 
 
-
 
NC_008060  Bcen_2562  phenylacetic acid degradation protein paaN2  86.75 
 
 
568 aa  973    Burkholderia cenocepacia AU 1054  Bacteria  normal  0.945881  n/a   
 
 
-
 
NC_013947  Snas_6112  phenylacetic acid degradation protein paaN  57.5 
 
 
575 aa  637    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.771737 
 
 
-
 
NC_008390  Bamb_0448  phenylacetic acid degradation protein paaN  86.32 
 
 
568 aa  955    Burkholderia ambifaria AMMD  Bacteria  normal  0.024942  n/a   
 
 
-
 
NC_011662  Tmz1t_1513  phenylacetic acid degradation protein paaN  56.45 
 
 
555 aa  622  1e-177  Thauera sp. MZ1T  Bacteria  normal  0.166964  n/a   
 
 
-
 
NC_008699  Noca_4493  phenylacetic acid degradation protein paaN  56.78 
 
 
557 aa  608  1e-173  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6185  phenylacetic acid degradation protein paaN  55.74 
 
 
555 aa  602  1.0000000000000001e-171  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2197  phenylacetic acid degradation protein paaN  56.24 
 
 
566 aa  571  1e-161  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0370  phenylacetic acid degradation protein paaN2  54.48 
 
 
554 aa  562  1.0000000000000001e-159  Dechloromonas aromatica RCB  Bacteria  hitchhiker  5.52975e-18  unclonable  0.0000000651019 
 
 
-
 
NC_010002  Daci_0808  phenylacetic acid degradation protein paaN  52.27 
 
 
552 aa  555  1e-157  Delftia acidovorans SPH-1  Bacteria  normal  0.464517  normal 
 
 
-
 
NC_008688  Pden_4798  phenylacetic acid degradation protein paaN  53.01 
 
 
559 aa  535  1e-150  Paracoccus denitrificans PD1222  Bacteria  normal  0.484445  normal  0.252551 
 
 
-
 
NC_013169  Ksed_01930  phenylacetic acid degradation protein paaN  54.9 
 
 
582 aa  531  1e-149  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0904  phenylacetic acid degradation protein paaN  53.35 
 
 
553 aa  509  1e-143  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3362  phenylacetic acid degradation protein paaN  52.51 
 
 
553 aa  508  9.999999999999999e-143  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.586736  n/a   
 
 
-
 
NC_008578  Acel_1435  phenylacetic acid degradation protein paaN  48.91 
 
 
556 aa  490  1e-137  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1136  phenylacetic acid degradation protein paaN  44.65 
 
 
552 aa  447  1.0000000000000001e-124  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.368939 
 
 
-
 
NC_008554  Sfum_0833  aldehyde dehydrogenase  27.79 
 
 
996 aa  96.7  1e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.286586  normal  0.902377 
 
 
-
 
NC_008312  Tery_3446  L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase  25.25 
 
 
993 aa  93.6  9e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3847  Aldehyde dehydrogenase (NAD(+))  24.79 
 
 
488 aa  87  8e-16  Gordonia bronchialis DSM 43247  Bacteria  normal  0.794962  n/a   
 
 
-
 
NC_013411  GYMC61_1043  1-pyrroline-5-carboxylate dehydrogenase  25.06 
 
 
515 aa  85.5  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_0544  aldehyde dehydrogenase  27.57 
 
 
482 aa  83.2  0.00000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.292442  n/a   
 
 
-
 
NC_012793  GWCH70_0274  1-pyrroline-5-carboxylate dehydrogenase  24.89 
 
 
515 aa  82  0.00000000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1710  aldehyde dehydrogenase  27.25 
 
 
513 aa  82  0.00000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1548  putative delta-1-pyrroline-5-carboxylate dehydrogenase  26.42 
 
 
516 aa  81.6  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6120  aldehyde dehydrogenase  29.93 
 
 
489 aa  81.3  0.00000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3333  delta-1-pyrroline-5-carboxylate dehydrogenase  25.6 
 
 
521 aa  81.3  0.00000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.000000027969 
 
 
-
 
NC_011071  Smal_3490  Aldehyde Dehydrogenase  28.76 
 
 
488 aa  81.3  0.00000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.836011  normal  0.347598 
 
 
-
 
NC_010557  BamMC406_6305  aldehyde dehydrogenase  30.26 
 
 
492 aa  80.9  0.00000000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  0.482135  normal  0.128394 
 
 
-
 
NC_008392  Bamb_5579  benzaldehyde dehydrogenase (NAD(+))  30.26 
 
 
492 aa  80.9  0.00000000000006  Burkholderia ambifaria AMMD  Bacteria  normal  0.623419  normal 
 
 
-
 
NC_008544  Bcen2424_6518  benzaldehyde dehydrogenase (NAD(+))  29.61 
 
 
489 aa  80.5  0.00000000000008  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1311  benzaldehyde dehydrogenase (NAD+)  29.61 
 
 
489 aa  80.5  0.00000000000008  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009355  OSTLU_13873  predicted protein  25.87 
 
 
471 aa  80.1  0.0000000000001  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4023  Aldehyde Dehydrogenase  28.33 
 
 
483 aa  79  0.0000000000002  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000030517  normal 
 
 
-
 
NC_012848  Rleg_4802  Aldehyde Dehydrogenase  27.17 
 
 
498 aa  79.3  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.217691  normal  0.597938 
 
 
-
 
NC_009438  Sputcn32_0647  succinylglutamic semialdehyde dehydrogenase  27.59 
 
 
486 aa  79.3  0.0000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.0597241  n/a   
 
 
-
 
NC_011071  Smal_1728  Aldehyde Dehydrogenase  27.58 
 
 
510 aa  79.3  0.0000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.193131  normal  0.860615 
 
 
-
 
NC_013947  Snas_4113  Aldehyde Dehydrogenase  28.27 
 
 
504 aa  78.6  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.676341 
 
 
-
 
NC_009718  Fnod_1641  putative delta-1-pyrroline-5-carboxylate dehydrogenase  25.84 
 
 
525 aa  78.6  0.0000000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0074  putative delta-1-pyrroline-5-carboxylate dehydrogenase  25.28 
 
 
530 aa  77.4  0.0000000000006  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00811  piperideine-6-carboxylate dehydrogenase  27.49 
 
 
526 aa  77  0.0000000000008  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0811  succinylglutamic semialdehyde dehydrogenase  26.14 
 
 
486 aa  76.3  0.000000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000309651 
 
 
-
 
NC_009052  Sbal_0573  succinylglutamic semialdehyde dehydrogenase  26.42 
 
 
486 aa  76.3  0.000000000001  Shewanella baltica OS155  Bacteria  normal  0.542951  n/a   
 
 
-
 
NC_009997  Sbal195_3878  succinylglutamic semialdehyde dehydrogenase  26.42 
 
 
486 aa  76.3  0.000000000001  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1959  delta-1-pyrroline-5-carboxylate dehydrogenase  26.8 
 
 
1001 aa  76.6  0.000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.028462 
 
 
-
 
NC_007778  RPB_3846  aldehyde dehydrogenase  27.39 
 
 
477 aa  76.6  0.000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2922  1-pyrroline-5-carboxylate dehydrogenase  26.79 
 
 
521 aa  76.3  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2610  aldehyde dehydrogenase  22.25 
 
 
458 aa  76.3  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.514086  n/a   
 
 
-
 
NC_007347  Reut_A1842  betaine-aldehyde dehydrogenase  26.93 
 
 
476 aa  75.9  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0319  bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase  26.17 
 
 
1035 aa  75.9  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.0134136  normal 
 
 
-
 
NC_014212  Mesil_3126  delta-1-pyrroline-5-carboxylate dehydrogenase  24.79 
 
 
515 aa  76.3  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0187882  normal 
 
 
-
 
NC_009674  Bcer98_0289  1-pyrroline-5-carboxylate dehydrogenase  24.77 
 
 
515 aa  76.3  0.000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0364  bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase  26.33 
 
 
1035 aa  75.1  0.000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.929522  normal 
 
 
-
 
NC_011729  PCC7424_1002  delta-1-pyrroline-5-carboxylate dehydrogenase  24.73 
 
 
991 aa  74.7  0.000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0261182 
 
 
-
 
NC_008262  CPR_2296  aldehyde dehydrogenase  22.02 
 
 
458 aa  74.7  0.000000000004  Clostridium perfringens SM101  Bacteria  normal  0.69034  n/a   
 
 
-
 
NC_002976  SERP1456  aldehyde dehydrogenase  24.06 
 
 
459 aa  74.3  0.000000000005  Staphylococcus epidermidis RP62A  Bacteria  normal  0.133276  n/a   
 
 
-
 
NC_011661  Dtur_0484  Aldehyde Dehydrogenase  24.74 
 
 
464 aa  74.7  0.000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1403  Aldehyde Dehydrogenase  27.32 
 
 
478 aa  74.3  0.000000000005  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0321305 
 
 
-
 
NC_007348  Reut_B4869  aldehyde dehydrogenase  28.95 
 
 
483 aa  74.3  0.000000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.0491848  n/a   
 
 
-
 
NC_007794  Saro_1668  aldehyde dehydrogenase  28.43 
 
 
466 aa  74.3  0.000000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1338  Aldehyde Dehydrogenase  27.57 
 
 
478 aa  73.9  0.000000000006  Ralstonia pickettii 12J  Bacteria  normal  normal  0.215169 
 
 
-
 
NC_007973  Rmet_1577  aldehyde dehydrogenase  27.76 
 
 
476 aa  73.9  0.000000000007  Cupriavidus metallidurans CH34  Bacteria  normal  0.0750441  normal 
 
 
-
 
NC_008321  Shewmr4_0613  succinylglutamic semialdehyde dehydrogenase  28.52 
 
 
487 aa  73.9  0.000000000007  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0367  aldehyde dehydrogenase family protein  27.59 
 
 
481 aa  73.6  0.000000000008  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2942  L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase  25.48 
 
 
993 aa  73.9  0.000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4733  aldehyde dehydrogenase  29.35 
 
 
492 aa  73.6  0.000000000008  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3244  aldehyde dehydrogenase  29.6 
 
 
489 aa  73.6  0.000000000008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2305  putative delta-1-pyrroline-5-carboxylate dehydrogenase  27.41 
 
 
516 aa  73.6  0.000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.639726 
 
 
-
 
NC_007948  Bpro_2450  betaine-aldehyde dehydrogenase  25.55 
 
 
496 aa  73.6  0.000000000009  Polaromonas sp. JS666  Bacteria  normal  normal  0.389244 
 
 
-
 
NC_007953  Bxe_C0302  benzaldehyde dehydrogenase (NAD+)  27.5 
 
 
490 aa  73.6  0.000000000009  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.333466 
 
 
-
 
NC_008543  Bcen2424_4781  betaine-aldehyde dehydrogenase  31.21 
 
 
500 aa  72.8  0.00000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.494412  normal 
 
 
-
 
NC_011658  BCAH187_A0381  1-pyrroline-5-carboxylate dehydrogenase  24.1 
 
 
515 aa  73.2  0.00000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0279  1-pyrroline-5-carboxylate dehydrogenase  24.1 
 
 
515 aa  73.2  0.00000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0282  1-pyrroline-5-carboxylate dehydrogenase  24.1 
 
 
515 aa  73.2  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2635  Aldehyde Dehydrogenase  31.49 
 
 
474 aa  73.2  0.00000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.311715 
 
 
-
 
NC_007530  GBAA_0309  1-pyrroline-5-carboxylate dehydrogenase  24.1 
 
 
515 aa  73.2  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0656  bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase  27.48 
 
 
1236 aa  73.2  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0340  1-pyrroline-5-carboxylate dehydrogenase  24.1 
 
 
515 aa  73.2  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008061  Bcen_3586  betaine-aldehyde dehydrogenase  31.21 
 
 
500 aa  72.8  0.00000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5502  betaine-aldehyde dehydrogenase  31.21 
 
 
500 aa  72.8  0.00000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0580  succinylglutamic semialdehyde dehydrogenase  27.79 
 
 
487 aa  72.8  0.00000000002  Shewanella loihica PV-4  Bacteria  normal  normal  0.728186 
 
 
-
 
NC_008751  Dvul_0070  putative delta-1-pyrroline-5-carboxylate dehydrogenase  25.07 
 
 
1006 aa  72.4  0.00000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2589  aldehyde dehydrogenase family protein  29.02 
 
 
497 aa  72.4  0.00000000002  Pseudomonas putida KT2440  Bacteria  normal  0.675648  normal  0.340951 
 
 
-
 
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