| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0811 |
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| Symbol | astD |
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| ID | 5611705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 961730 |
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| End bp | 963190 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931659 |
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| Product | succinylglutamic semialdehyde dehydrogenase |
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| Protein accession | YP_001472550 |
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| Protein GI | 157373950 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR03240] succinylglutamic semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000309651 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTCAAT TTATTAAAGG CCAGTGGGTT GCCGGCCTAG GTCACGCAGT GACTTCAAAA
AACCCAGCAA ATAATGACGT TATCTGGAAC AGCCAAACCG CGACGCCAGA GCAGGTTAAT
ACCGCGGTTG AAGCTGCACG TGAAGTGCAG TTTGACTGGT TCATGCTGGG TTTTGAGGCT
CGCCTTGCGA TTGTCGAAGC TTACCGTGCC CAGTTAGAAG AAAATAAAGC TGAGATAGCC
GAAACTATCG CTCAGGAGAC CGGAAAGCCA CAGTGGGAAA CAGCCACCGA AGCCGGTGCC
ATGATTGGCA AGATTGGCTT GTCAGTAGCG GCTTACAATA AGCGCACCGG AACATCAGAA
AATGATACTC CAGCAGGACG TGCAGTTCTT CGTCATAAGC CTCACGGTGT CGTTGCCGTT
TTCGGCCCTT ATAACTTCCC CGGGCATCTG CCTAATGGAC ATATTGTGCC TGCACTGCTT
GCAGGTAACA CTGTTGTCTT CAAGCCATCT GAGTTAACGC CTAAAGTCGC AGAGTTGATG
TTGAAGCTTT GGGAGAAGGC TGGACTACCA GCCGGCGTTA TCAATCTGGT TCAAGGCGAA
GTTGAAACCG GAAAAGCGCT GGCATCTCAC CCCCAGATTG ATGGTCTGTT TTTTACCGGA
AGTTCTCGCA CCGGACATAT CTTGCATCAA CAGTATGCCG GCGAGCCCGG AAAAATTCTG
GCATTAGAGA TGGGAGGAAA TAACCCTCTT ATCATCAAAG GCGTTAAAGA CAGTAAGGCT
GCTGTACACG ATATTATTCA GTCGGCTTAC ATCTCCTCAG GCCAACGCTG TACCTGCGCG
CGTCGCTTGT ATGTTGAGAA AGGTGCAGAG GGCGATGCTC TGTTGGCTCA ACTTACCGAT
GCCGTTAAGC GTATTGTGGT TGGCGCCTGG AATGCTCAGC CACAGCCGTT TATGGGAGCG
ATGATCTCAG AAACTGCCGC TAAGGGAATG GTGGAGGCTC AACGTAACCT GGTTAACCTC
GGTGGCCATT CATTAGTCGA GCTGACTCAT ATTGAAGAGG GTACTGGCCT GGTATCTCCG
GGGTTAATTG ATGTGTCTCA GGTTATCGAA CTGCCTGATG AGGAGTACTT CGGTCCTCTG
CTGCAAGTGG TGCGTTATAC CGATTTCGAT GAGGCGATCA AGTTAGCGAA CAATACCCGC
TATGGACTCT CTGCCGGGAT CCTCGCCGAT AGTCGTGATG ACTATGAGTA CTTCCTTGCG
CGTATTCGTG CCGGGATTGT TAACTGGAAT AAGCAGATCA CTGGCGCATC TGGTGCAGCC
CCCTTCGGTG GCGTAGGCGC ATCGGGTAAC CATAGAGCGA GCGCGTTCTA TGCTGCCGAC
TACTGTGCTT ACCCGGTTGC TTCTGTCGAA GCCGATGAAG TTAGCCTTCC CGCTAATTTG
AGTCCTGGTT TGAGCCTTTA A
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| Protein sequence | MTQFIKGQWV AGLGHAVTSK NPANNDVIWN SQTATPEQVN TAVEAAREVQ FDWFMLGFEA
RLAIVEAYRA QLEENKAEIA ETIAQETGKP QWETATEAGA MIGKIGLSVA AYNKRTGTSE
NDTPAGRAVL RHKPHGVVAV FGPYNFPGHL PNGHIVPALL AGNTVVFKPS ELTPKVAELM
LKLWEKAGLP AGVINLVQGE VETGKALASH PQIDGLFFTG SSRTGHILHQ QYAGEPGKIL
ALEMGGNNPL IIKGVKDSKA AVHDIIQSAY ISSGQRCTCA RRLYVEKGAE GDALLAQLTD
AVKRIVVGAW NAQPQPFMGA MISETAAKGM VEAQRNLVNL GGHSLVELTH IEEGTGLVSP
GLIDVSQVIE LPDEEYFGPL LQVVRYTDFD EAIKLANNTR YGLSAGILAD SRDDYEYFLA
RIRAGIVNWN KQITGASGAA PFGGVGASGN HRASAFYAAD YCAYPVASVE ADEVSLPANL
SPGLSL
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