| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0265 |
|---|
| Symbol | |
|---|
| ID | 5056703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 301827 |
|---|
| End bp | 303512 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640472537 |
|---|
| Product | phenylacetic acid degradation protein paaN |
|---|
| Protein accession | YP_001157128 |
|---|
| Protein GI | 145592831 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02288] phenylacetic acid degradation protein paaN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000588843 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCGG ACATGACGGA GACCCCGCAC CCCCTGTACG ACAGGCACGC CGACACCCTC
GACCGGGCGC TGACCGCCAT CTCGCAGCGC GGGTACTGGT CCGCCTACCC GGAGTCGCCC
AGCCCGAGGG TGTACGGCGA GACCGCTGCC GGTGACGGCA AGGTGGCCTT CGAGGCGTAC
CTCGGTCGTG ACTTTCCCCT TGACCAAGTC GGTGACGGGA GCACGGTTCG GACCGAGGCC
AGCCCCTTCG GCGTCGACCT GGGAGTCGGC TACCCGCACG CGACGGCCGA CCACCTCACC
ACCGCGGCCT CCACGGCACT GCCGTCGTGG CGAGACGCCG GCCCCCAGGC TCGGGCGGGC
GTCTGTCTGG AGATCCTGGA TCGGCTGCAC CGCAACGTCT TCGAGCTGGC CAACGCGGTG
CAGTTCACCA GTGGTCAGGC GTTCGTGATG GCCTTCCAGG CGGGTGGGGC GCACGCGTTG
GACCGGGCGT TGGAGGCGCT CGCCTACGCG TACGCGGAGA TGACCCGGCA CCCGGGAACG
GCCGGCTGGG AGAAGGCGGC GGGCAAGGGT GACCCGCTGC GGATGACCAA GACCTTCCAC
GTGGTGCCGC GGGGCGTCGC GCTGGTGATC GGCTGCAACA CCTTCCCGAC CTGGAACTCG
TACCCGGGAC TCTTCGCCTC GCTGGTCACC GGCAACCCGG TGATCGTCAA GCCGCATCCG
CGCGCGGTGC TGCCGCTCGC GGTCACGGTG CGGTATGCCC GACAGGTGCT CGCCGAGGCC
GGCTTCGACC CGAACCTGGT GCAGCTCGCC CCCGAAGCGC CGGGCGAGAA GCTCGCCTCC
ACGCTGGCCC AGCATCCGGC GGTGCGGATC GTCGACTTCA CCGGCTCCTC CGAGTACGGC
GACTGGCTGG AGGCCAACGC CCGGCAGGCG CAGGTCTACA CCGAGAAGGC TGGCCTGAAC
GCGGTGGTCA TCGACTCCAC CGACGACTTC GGCGGGATGT GCCGCAACCT GGGATTCACG
CTGACCCTCT ATAGCGGCCA GATGTGTACC ACCTCCCAGA ACATCCTGAT TCCCCGGGAC
GGCATCGAGA CCGACCAGGG GCACAAGAGC TTCGCCGAGG TGGCCACCGG TATCGCGACG
GCGGTCAGCA AGCTCACCGC CGATCCGGCG CGCGGCGTTG AGCTGACCGG CGCGATCGTC
AACGACGGGG TGTTGGAGCG GCTGGACGAG GTGACCAAGG TCGGTGAGTC GGTGCTGGAG
TCCCGTACCG TCACCCACCC GGCTTTCCCC GGCGCGGTGG TCCGCACGCC GACCATTGTC
CGACTGAACG CCGACGACAC CGCCACCTAC ACGCGGGAGT GGTTTGGCCC GATCTCGTTC
GTGATCGGGA CCGACTCCAC CGGGCACAGC CTGGAGCTGC TGCGCGCCAC GGTGGGTGAG
AAGGGTGCAC TGACCGCGGC GGTCTACTCG ACCGATGATG CGGTGCTGGA CGCGGCCGAG
ACGGCGGCGG TCGAGGTCGG AGTGCACCTG TCGGCGAACC TGACCGGGGG TGTCTTCGTC
AACCAGTCGG CGGCCTTCTC CGACTTCCAC GGCAGCGGTG CCAACGCGGC GGCCAACGCC
GCGCTCACCG ATGGTGCCTA CGTCGCCAAC CGATTCCGCA TCGTGCAGAG TCGTCGCCAC
GTCTGA
|
|---|
| Protein sequence | MMADMTETPH PLYDRHADTL DRALTAISQR GYWSAYPESP SPRVYGETAA GDGKVAFEAY
LGRDFPLDQV GDGSTVRTEA SPFGVDLGVG YPHATADHLT TAASTALPSW RDAGPQARAG
VCLEILDRLH RNVFELANAV QFTSGQAFVM AFQAGGAHAL DRALEALAYA YAEMTRHPGT
AGWEKAAGKG DPLRMTKTFH VVPRGVALVI GCNTFPTWNS YPGLFASLVT GNPVIVKPHP
RAVLPLAVTV RYARQVLAEA GFDPNLVQLA PEAPGEKLAS TLAQHPAVRI VDFTGSSEYG
DWLEANARQA QVYTEKAGLN AVVIDSTDDF GGMCRNLGFT LTLYSGQMCT TSQNILIPRD
GIETDQGHKS FAEVATGIAT AVSKLTADPA RGVELTGAIV NDGVLERLDE VTKVGESVLE
SRTVTHPAFP GAVVRTPTIV RLNADDTATY TREWFGPISF VIGTDSTGHS LELLRATVGE
KGALTAAVYS TDDAVLDAAE TAAVEVGVHL SANLTGGVFV NQSAAFSDFH GSGANAAANA
ALTDGAYVAN RFRIVQSRRH V
|
|---|
| |