| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1136 |
|---|
| Symbol | |
|---|
| ID | 8357252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1355230 |
|---|
| End bp | 1356888 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644963292 |
|---|
| Product | phenylacetic acid degradation protein paaN |
|---|
| Protein accession | YP_003120835 |
|---|
| Protein GI | 256420182 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02288] phenylacetic acid degradation protein paaN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.368939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACA TCAAACACCA AAACACAATT GAGAACGCCG TAAAGGCGAA TCATGAAAGG
GCTTTTTATT CACAGTACCC GGAACACCCC AAAGCCTATG GTGAAAATGC AGCAGAGCAG
GGCGAAAACC GCTATAAAGC ACTGCTGCAG CAACCCTTTA AGCAATTGCT GCAAACAGGA
GAAACTTCCT GGGCAGGAGA AGAAGTGTCT CCTTATACCC AGGAGGCACT GGGCATTACC
TACCCGATCT TCTCTCCCGA CGAACTGGTA CACCGTGCTA TCGCTGCAGC GCCGCAATGG
CGTAATACCA CTGTAGACGT ACGTGCTGAC ATCCTTGTGG AAACACTGGA AGCAGTAAAA
GAACGCTTCT TCGACATTGC CTACGCCACT ATGCATACGA CCGGACAAAG CTTTATGATG
AGCTTCCAGG CTTCTGGTCC GCATGCCAAT GACAGGGCAC TTGAAGCAAT TGCCATGGGC
TATCATGAAG GCAACCGCTA CCCGGCATCT CTGATGTGGG AAAAACCAAT GGGTAAAACA
TCCCTTCAAC TGAAAAAGAA TTTCCGGGCC ATTCCGAAAG GAGTCGGTCT GGTGATAGGC
TGCTCCACCT TCCCGGTATG GAACTCATTG CCAGGCATTT ATGCCGACCT TGTAACCGGC
AATCCGGTGA TTGTGAAACC ACACCCGAAA GCCATTCTGC CAATTGCCAT CGTAGTAGCT
GCAATTCAGC AGGTATTACA GGAAAAAGGC TTCAGCCCTG CCCTTTGTCA GCTGGCAGCG
GATACGTCAA CAGCGCTTAT TACCAAAACC CTGTGCGAGC ATCCGGGTAT TCAGCTGATT
GACTATACCG GCGGCAGTGC CTTTGGTAAC TATGTGGAGG CATTGAAAAA CAAGACCGTA
TTCACTGAAA AAGCAGGCGT CAACTCTGTT ATTATCGACA GCGTGGCAGA TATCGATGCG
GTGATGCAGA ACCTGGCTTT CTCAGTGTCA TTATACTCAG GACAGATGTG TACTGCTCCG
CAGAATTTCT TTATTCCTGC TGAAGGAATC ACGACCAGCA ATGGCAGACT TTCCTTTGAT
GAAGTAGTAC AGAAATTTAA GGATGCGGTT GTAAGCCTCG TCAACAATCC TAAAATGGGA
GCGGGTACAC TGGGCGCCCT GCAGAACGAA AATACCCTGG AAAGGGCACA TAATGCAGGC
AAACTGGGCG CAAAAGTCAT CCTTGAAGGA CAACCTTTAA TCAATGAAGA GTTTACCCAT
GCCCGTGGTT GTACGCCATC CATCCTGGAA GTCAGCAGCA ATGATAAACA TATCTTCGAG
CAGGAATTAT TTGGCCCGGT TTTGTTGCTG ATTAAAACAA AGGATACCCA TGAATCCATA
CAGCTGGCCC GGCAAATGGC GCAACAACAT GGTGCGATCA CCTGCGCGGC CTATACCACC
AGTCCCGAGA TGAAAGAAAA GATCACCGAA GAGATGAATG GGGTATTTAC ACCGGTATCC
TTTAACTTTA CCGGATTCAT CTGGGTAAAT CAACATGCGG CATTTTCAGA TTTTCATGTG
ACAGGTGGAA ACCCTGCCGG AAATGCCAGT TTCACTAATC CGGAATTCAT CCTGCGCCGG
TTCGTATGGG TAGGAAACCG GGAAGTGGCC GGAAGCTGA
|
|---|
| Protein sequence | MFNIKHQNTI ENAVKANHER AFYSQYPEHP KAYGENAAEQ GENRYKALLQ QPFKQLLQTG
ETSWAGEEVS PYTQEALGIT YPIFSPDELV HRAIAAAPQW RNTTVDVRAD ILVETLEAVK
ERFFDIAYAT MHTTGQSFMM SFQASGPHAN DRALEAIAMG YHEGNRYPAS LMWEKPMGKT
SLQLKKNFRA IPKGVGLVIG CSTFPVWNSL PGIYADLVTG NPVIVKPHPK AILPIAIVVA
AIQQVLQEKG FSPALCQLAA DTSTALITKT LCEHPGIQLI DYTGGSAFGN YVEALKNKTV
FTEKAGVNSV IIDSVADIDA VMQNLAFSVS LYSGQMCTAP QNFFIPAEGI TTSNGRLSFD
EVVQKFKDAV VSLVNNPKMG AGTLGALQNE NTLERAHNAG KLGAKVILEG QPLINEEFTH
ARGCTPSILE VSSNDKHIFE QELFGPVLLL IKTKDTHESI QLARQMAQQH GAITCAAYTT
SPEMKEKITE EMNGVFTPVS FNFTGFIWVN QHAAFSDFHV TGGNPAGNAS FTNPEFILRR
FVWVGNREVA GS
|
|---|
| |