| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0580 |
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| Symbol | astD |
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| ID | 4923603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 657575 |
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| End bp | 659038 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162113 |
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| Product | succinylglutamic semialdehyde dehydrogenase |
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| Protein accession | YP_001092711 |
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| Protein GI | 127511514 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR03240] succinylglutamic semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.728186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGAGTC AATTTATTAA CGGCCAGTGG GTTGCCGGTC TGGGCCACGA TGTGGTCTCG
AAGAACCCAG CAAATCAAGA AGTGATCTGG GAAAGCAAGA CGGCGACCCC AGAGCAGGTT
AACGCAGCAG TAGAGGCGGC GCGTGCCGCT CAGTTCGACT GGTTCATGCT GGGCTTCGAT
GCCCGCCTGG CGATTGTCGA AGCCTACCGC GACCAGCTCG AGGCTCACAA GGGCGATATC
GCCGAGGTGA TCGCTCAGGA AACCGGTAAG CCACAGTGGG AAACCGCGAC CGAAGCAGGG
GCCATGATCG GTAAGATCGG CCTGTCGGTC GCTGCCTACC ACAAGCGTAC CGGCACCTCT
GAAAACGACA CCCCAGCCGG CCGCGCCGTG CTGCGTCACA AGCCACACGG CGTGGTGGCG
GTATTTGGTC CCTACAACTT CCCGGGCCAC CTGCCGAACG GCCATATCGT GCCTGCACTG
CTTGCGGGTA ACACAGTCGT GTTCAAGCCA TCTGAACTCA CCCCTAAGAC GGCCGAGCTG
ATGCTCAAGC TGTGGGAGAA GGCGGGTCTG CCGGCTGGCG TGATCAACCT GGTTCAAGGC
GAAGTGGAAA CCGGCAAGGC GCTGGCGTCA CATCCGCAGA TCGACGGCCT CTTCTTCACC
GGTAGCTCAC GTACGGGCCA CATCCTGCAC CAACAATACG CGGGTCATCC GGGTAAGATC
CTGGCGCTGG AGATGGGCGG CAACAACCCG CTGATCATCA AGGGCGTTAA AGACACCCTG
GCGGCGGTTC ACGATATCAT TCAGTCGGCT TACATCTCAT CGGGTCAACG CTGCACCTGT
GCCCGTCGTC TCTATGTGGA GAAGGGCGCC GAGGGCGATG CACTGCTGGC TAAGCTGGCC
GAGGCGGTTA AGCAGATCAA GGTGGGTCCT TGGAATGCGC AGCCACAGCC ATTCATGGGC
TCTATGATTT CTGAGGCCGC GGCCAAAGGC ATGGTAGAAG CTCAACGTAA CCTGATCAAC
CTGGGCGGTA CACCGCTGGT TGAGCTTAAG CATCTGGAAG CCGGTACCGG CCTTGTGTCT
CCTGGTCTTA TCGATGTGAC TCAGGTGATC GAGCTGCCAG ACGAAGAGTA CTTCGGCCCA
CTGCTGCAGG TGGTGCGCTA CACAGACTTC GACGAGGCGA TCAAGCTGGC GAACGACACC
CGCTATGGCC TCTCTGCCGG TATCTTGGCG GACAGCCGCG AAGACTACGA CTACTTCTTG
GCGCGTATCC GTGCGGGTAT CGTCAACTGG AACAAGCAGA TCACAGGCGC ATCAGGTTCG
GCACCTTTTG GTGGCGTTGG CGCCTCGGGT AACCACAGGG CGAGCGCCTT CTATGCCGCC
GACTACTGTG CCTATCCGGT CGCTTCGGTC GAGGCCGATG CCCTGGCCAT GCCAGCCAGC
CTGAGTCCGG GTCTGACCCT TTAG
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| Protein sequence | MMSQFINGQW VAGLGHDVVS KNPANQEVIW ESKTATPEQV NAAVEAARAA QFDWFMLGFD
ARLAIVEAYR DQLEAHKGDI AEVIAQETGK PQWETATEAG AMIGKIGLSV AAYHKRTGTS
ENDTPAGRAV LRHKPHGVVA VFGPYNFPGH LPNGHIVPAL LAGNTVVFKP SELTPKTAEL
MLKLWEKAGL PAGVINLVQG EVETGKALAS HPQIDGLFFT GSSRTGHILH QQYAGHPGKI
LALEMGGNNP LIIKGVKDTL AAVHDIIQSA YISSGQRCTC ARRLYVEKGA EGDALLAKLA
EAVKQIKVGP WNAQPQPFMG SMISEAAAKG MVEAQRNLIN LGGTPLVELK HLEAGTGLVS
PGLIDVTQVI ELPDEEYFGP LLQVVRYTDF DEAIKLANDT RYGLSAGILA DSREDYDYFL
ARIRAGIVNW NKQITGASGS APFGGVGASG NHRASAFYAA DYCAYPVASV EADALAMPAS
LSPGLTL
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