More than 300 homologs were found in PanDaTox collection
for query gene Pden_4798 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4798  phenylacetic acid degradation protein paaN  100 
 
 
559 aa  1126    Paracoccus denitrificans PD1222  Bacteria  normal  0.484445  normal  0.252551 
 
 
-
 
NC_011894  Mnod_3362  phenylacetic acid degradation protein paaN  61.04 
 
 
553 aa  597  1e-169  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.586736  n/a   
 
 
-
 
NC_007348  Reut_B3740  phenylacetic acid degradation protein paaN2  54.18 
 
 
554 aa  578  1.0000000000000001e-163  Ralstonia eutropha JMP134  Bacteria  normal  0.0891249  n/a   
 
 
-
 
NC_009720  Xaut_0904  phenylacetic acid degradation protein paaN  61.19 
 
 
553 aa  563  1.0000000000000001e-159  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0808  phenylacetic acid degradation protein paaN  54.8 
 
 
552 aa  541  9.999999999999999e-153  Delftia acidovorans SPH-1  Bacteria  normal  0.464517  normal 
 
 
-
 
NC_010622  Bphy_2689  phenylacetic acid degradation protein paaN  53.31 
 
 
563 aa  538  1e-151  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.0000855846  normal 
 
 
-
 
NC_007510  Bcep18194_A3630  phenylacetic acid degradation protein paaN2  52.54 
 
 
568 aa  530  1e-149  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000209323  normal  0.623158 
 
 
-
 
NC_007651  BTH_I2900  phenylacetic acid degradation protein paaN  51.99 
 
 
568 aa  529  1e-149  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.0000137012  n/a   
 
 
-
 
NC_008060  Bcen_2562  phenylacetic acid degradation protein paaN2  52.9 
 
 
568 aa  531  1e-149  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.945881  n/a   
 
 
-
 
NC_008542  Bcen2424_0543  phenylacetic acid degradation protein paaN  52.9 
 
 
568 aa  531  1e-149  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.0023429  n/a   
 
 
-
 
NC_009076  BURPS1106A_3573  phenylacetic acid degradation protein paaN  51.45 
 
 
568 aa  526  1e-148  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0515  phenylacetic acid degradation protein paaN  52.54 
 
 
568 aa  526  1e-148  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000855749  normal  0.271248 
 
 
-
 
NC_008699  Noca_4493  phenylacetic acid degradation protein paaN  52.36 
 
 
557 aa  528  1e-148  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0931  aldehyde dehydrogenase family protein  51.45 
 
 
568 aa  523  1e-147  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00000213032  n/a   
 
 
-
 
NC_006349  BMAA0543  aldehyde dehydrogenase family protein  51.63 
 
 
568 aa  525  1e-147  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.000511741  n/a   
 
 
-
 
NC_007434  BURPS1710b_3564  phenylacetic acid degradation protein paaN  51.27 
 
 
568 aa  523  1e-147  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00000332176  n/a   
 
 
-
 
NC_009079  BMA10247_A1901  aldehyde dehydrogenase family protein  51.63 
 
 
568 aa  525  1e-147  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0596942  n/a   
 
 
-
 
NC_009074  BURPS668_3546  phenylacetic acid degradation protein paaN  51.45 
 
 
568 aa  524  1e-147  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.0000144132  n/a   
 
 
-
 
NC_008390  Bamb_0448  phenylacetic acid degradation protein paaN  52.9 
 
 
568 aa  525  1e-147  Burkholderia ambifaria AMMD  Bacteria  normal  0.024942  n/a   
 
 
-
 
NC_008784  BMASAVP1_0634  aldehyde dehydrogenase family protein  51.63 
 
 
568 aa  525  1e-147  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.000013485  n/a   
 
 
-
 
NC_013131  Caci_6185  phenylacetic acid degradation protein paaN  51.18 
 
 
555 aa  525  1e-147  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0473  phenylacetic acid degradation protein paaN  52.72 
 
 
568 aa  521  1e-146  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.0000197597  normal  0.595687 
 
 
-
 
NC_010681  Bphyt_3486  phenylacetic acid degradation protein paaN  53.01 
 
 
566 aa  521  1e-146  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000217108  hitchhiker  0.00037416 
 
 
-
 
NC_007951  Bxe_A0470  phenylacetic acid ring-opening protein (PaaZ')  52.94 
 
 
566 aa  516  1.0000000000000001e-145  Burkholderia xenovorans LB400  Bacteria  normal  0.0566882  normal 
 
 
-
 
NC_010084  Bmul_2851  phenylacetic acid degradation protein paaN  51.81 
 
 
568 aa  514  1e-144  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.000000806578  normal  0.567256 
 
 
-
 
NC_009380  Strop_0265  phenylacetic acid degradation protein paaN  50.18 
 
 
561 aa  504  1e-141  Salinispora tropica CNB-440  Bacteria  normal  hitchhiker  0.000588843 
 
 
-
 
NC_009953  Sare_0307  phenylacetic acid degradation protein paaN  50.18 
 
 
557 aa  499  1e-140  Salinispora arenicola CNS-205  Bacteria  normal  0.777048  hitchhiker  0.000751962 
 
 
-
 
NC_013739  Cwoe_2197  phenylacetic acid degradation protein paaN  51.72 
 
 
566 aa  501  1e-140  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1513  phenylacetic acid degradation protein paaN  48.46 
 
 
555 aa  501  1e-140  Thauera sp. MZ1T  Bacteria  normal  0.166964  n/a   
 
 
-
 
NC_013947  Snas_6112  phenylacetic acid degradation protein paaN  47.35 
 
 
575 aa  488  1e-137  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.771737 
 
 
-
 
NC_007298  Daro_0370  phenylacetic acid degradation protein paaN2  47.43 
 
 
554 aa  456  1e-127  Dechloromonas aromatica RCB  Bacteria  hitchhiker  5.52975e-18  unclonable  0.0000000651019 
 
 
-
 
NC_008578  Acel_1435  phenylacetic acid degradation protein paaN  45.93 
 
 
556 aa  441  9.999999999999999e-123  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1136  phenylacetic acid degradation protein paaN  43.57 
 
 
552 aa  430  1e-119  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.368939 
 
 
-
 
NC_013169  Ksed_01930  phenylacetic acid degradation protein paaN  46.52 
 
 
582 aa  430  1e-119  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0544  aldehyde dehydrogenase  27.95 
 
 
482 aa  92.4  2e-17  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.292442  n/a   
 
 
-
 
NC_008554  Sfum_0833  aldehyde dehydrogenase  27.86 
 
 
996 aa  87.8  5e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.286586  normal  0.902377 
 
 
-
 
NC_008726  Mvan_5157  aldehyde dehydrogenase  26.74 
 
 
489 aa  87.4  6e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.204218  normal 
 
 
-
 
NC_008609  Ppro_0074  putative delta-1-pyrroline-5-carboxylate dehydrogenase  27.17 
 
 
530 aa  86.7  0.000000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3847  Aldehyde dehydrogenase (NAD(+))  25.68 
 
 
488 aa  84.3  0.000000000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.794962  n/a   
 
 
-
 
NC_008699  Noca_3634  aldehyde dehydrogenase  28.93 
 
 
480 aa  83.6  0.000000000000008  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2542  aldehyde dehydrogenase  27.59 
 
 
500 aa  83.6  0.000000000000009  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0114  delta-1-pyrroline-5-carboxylate dehydrogenase  26.39 
 
 
991 aa  83.6  0.000000000000009  Cyanothece sp. PCC 8802  Bacteria  normal  0.951346  normal  0.654894 
 
 
-
 
NC_008705  Mkms_2587  aldehyde dehydrogenase  27.59 
 
 
500 aa  83.6  0.000000000000009  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0117  delta-1-pyrroline-5-carboxylate dehydrogenase  26.09 
 
 
991 aa  83.2  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_4063  betaine-aldehyde dehydrogenase  30 
 
 
454 aa  82.4  0.00000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.136485  normal 
 
 
-
 
NC_007908  Rfer_0217  aldehyde dehydrogenase  27.63 
 
 
520 aa  82.8  0.00000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.286269  n/a   
 
 
-
 
NC_011729  PCC7424_1002  delta-1-pyrroline-5-carboxylate dehydrogenase  27.35 
 
 
991 aa  81.6  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0261182 
 
 
-
 
NC_009077  Mjls_2580  aldehyde dehydrogenase  27.3 
 
 
500 aa  81.3  0.00000000000004  Mycobacterium sp. JLS  Bacteria  normal  0.287706  normal 
 
 
-
 
NC_008705  Mkms_4666  aldehyde dehydrogenase  26.39 
 
 
489 aa  81.3  0.00000000000004  Mycobacterium sp. KMS  Bacteria  normal  0.260999  normal 
 
 
-
 
NC_008146  Mmcs_4578  aldehyde dehydrogenase  26.39 
 
 
489 aa  81.3  0.00000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_3209  delta-1-pyrroline-5-carboxylate dehydrogenase  26.53 
 
 
1001 aa  81.3  0.00000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12874  aldehyde dehydrogenase aldC  28.66 
 
 
455 aa  80.5  0.00000000000007  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0274  1-pyrroline-5-carboxylate dehydrogenase  24.49 
 
 
515 aa  80.5  0.00000000000008  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2922  1-pyrroline-5-carboxylate dehydrogenase  26.21 
 
 
521 aa  79.7  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1350  putative aldehyde dehydrogenase  26.63 
 
 
496 aa  79  0.0000000000002  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3125  aldehyde dehydrogenase  30.35 
 
 
502 aa  79  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3135  aldehyde dehydrogenase  26.45 
 
 
463 aa  79.3  0.0000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1806  delta-1-pyrroline-5-carboxylate dehydrogenase  25.63 
 
 
1004 aa  79.3  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00285483 
 
 
-
 
NC_007948  Bpro_1625  aldehyde dehydrogenase  27.27 
 
 
518 aa  79  0.0000000000002  Polaromonas sp. JS666  Bacteria  normal  0.0898756  normal 
 
 
-
 
NC_013093  Amir_2078  aldehyde dehydrogenase  31.41 
 
 
452 aa  79.3  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1600  aldehyde dehydrogenase  25.27 
 
 
489 aa  79.3  0.0000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1037  aldehyde dehydrogenase  31.97 
 
 
481 aa  79  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.030007 
 
 
-
 
NC_013411  GYMC61_1043  1-pyrroline-5-carboxylate dehydrogenase  25.07 
 
 
515 aa  79.3  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_2695  aldehyde dehydrogenase  29.28 
 
 
477 aa  79.3  0.0000000000002  Pseudomonas putida W619  Bacteria  normal  0.152226  normal 
 
 
-
 
NC_009077  Mjls_2042  betaine-aldehyde dehydrogenase  27.58 
 
 
455 aa  78.2  0.0000000000003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.57203 
 
 
-
 
NC_007413  Ava_2942  L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase  26.25 
 
 
993 aa  78.6  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1284  aldehyde dehydrogenase  26.92 
 
 
478 aa  78.6  0.0000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal  0.811614 
 
 
-
 
NC_011831  Cagg_3333  delta-1-pyrroline-5-carboxylate dehydrogenase  25.27 
 
 
521 aa  78.6  0.0000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.000000027969 
 
 
-
 
NC_008146  Mmcs_2059  betaine-aldehyde dehydrogenase  27.58 
 
 
455 aa  78.2  0.0000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.807209  n/a   
 
 
-
 
NC_008705  Mkms_2105  betaine-aldehyde dehydrogenase  27.58 
 
 
455 aa  78.2  0.0000000000003  Mycobacterium sp. KMS  Bacteria  normal  0.0684833  normal  0.0301817 
 
 
-
 
NC_009077  Mjls_4961  aldehyde dehydrogenase  26.39 
 
 
489 aa  77.8  0.0000000000005  Mycobacterium sp. JLS  Bacteria  normal  normal  0.403039 
 
 
-
 
NC_011146  Gbem_2411  delta-1-pyrroline-5-carboxylate dehydrogenase  25.35 
 
 
1004 aa  77.8  0.0000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  0.0350749  n/a   
 
 
-
 
NC_009674  Bcer98_0289  1-pyrroline-5-carboxylate dehydrogenase  24.86 
 
 
515 aa  77.4  0.0000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0853  aldehyde dehydrogenase  28.07 
 
 
486 aa  77.4  0.0000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.55655  normal 
 
 
-
 
NC_013517  Sterm_1098  Aldehyde Dehydrogenase  27.16 
 
 
476 aa  77.4  0.0000000000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1641  putative delta-1-pyrroline-5-carboxylate dehydrogenase  24.49 
 
 
525 aa  77  0.0000000000008  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0823  glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent  27.42 
 
 
475 aa  76.6  0.000000000001  Streptococcus agalactiae 2603V/R  Bacteria  decreased coverage  0.00319051  n/a   
 
 
-
 
NC_007333  Tfu_1776  betaine-aldehyde dehydrogenase  31.08 
 
 
472 aa  76.3  0.000000000001  Thermobifida fusca YX  Bacteria  normal  0.146977  n/a   
 
 
-
 
NC_008726  Mvan_2280  betaine-aldehyde dehydrogenase  28.79 
 
 
458 aa  76.3  0.000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0891153 
 
 
-
 
NC_013223  Dret_1959  delta-1-pyrroline-5-carboxylate dehydrogenase  26.11 
 
 
1001 aa  76.3  0.000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.028462 
 
 
-
 
NC_007969  Pcryo_1015  aldehyde dehydrogenase  26.01 
 
 
496 aa  76.6  0.000000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2146  delta-1-pyrroline-5-carboxylate dehydrogenase  25 
 
 
1013 aa  76.6  0.000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008261  CPF_2610  aldehyde dehydrogenase  23.88 
 
 
458 aa  76.6  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.514086  n/a   
 
 
-
 
NC_013739  Cwoe_2635  Aldehyde Dehydrogenase  30.65 
 
 
474 aa  75.5  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.311715 
 
 
-
 
NC_013501  Rmar_2008  Aldehyde Dehydrogenase  29.05 
 
 
465 aa  75.5  0.000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8568  Aldehyde Dehydrogenase  28.36 
 
 
484 aa  75.9  0.000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1695  aldehyde dehydrogenase  27.09 
 
 
510 aa  75.9  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal  0.309119 
 
 
-
 
NC_009767  Rcas_2305  putative delta-1-pyrroline-5-carboxylate dehydrogenase  24.23 
 
 
516 aa  75.5  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.639726 
 
 
-
 
NC_011083  SeHA_C3372  phenylacetaldehyde dehydrogenase  28.37 
 
 
494 aa  75.1  0.000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0090  aldehyde dehydrogenase  25.47 
 
 
516 aa  75.5  0.000000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4591  Betaine-aldehyde dehydrogenase  27.6 
 
 
486 aa  75.1  0.000000000003  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_002939  GSU3395  proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase  26.11 
 
 
1004 aa  74.7  0.000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3139  aldehyde dehydrogenase  28.19 
 
 
495 aa  74.7  0.000000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5518  Aldehyde Dehydrogenase  28.18 
 
 
485 aa  74.7  0.000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.34822  normal  0.179589 
 
 
-
 
NC_008312  Tery_3446  L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase  25.22 
 
 
993 aa  74.3  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS05194  putative benzaldehyde dehydrogenase oxidoreductase protein  26.65 
 
 
492 aa  73.9  0.000000000007  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.0026447  normal  0.397505 
 
 
-
 
NC_007951  Bxe_A1944  betaine-aldehyde dehydrogenase  28.11 
 
 
474 aa  73.9  0.000000000007  Burkholderia xenovorans LB400  Bacteria  normal  0.0167894  normal 
 
 
-
 
NC_008262  CPR_2296  aldehyde dehydrogenase  23.31 
 
 
458 aa  73.9  0.000000000007  Clostridium perfringens SM101  Bacteria  normal  0.69034  n/a   
 
 
-
 
NC_006274  BCZK0282  1-pyrroline-5-carboxylate dehydrogenase  24.93 
 
 
515 aa  73.2  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2501  Aldehyde Dehydrogenase  25.76 
 
 
537 aa  73.2  0.00000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.551853 
 
 
-
 
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