More than 300 homologs were found in PanDaTox collection
for query gene Bamb_4419 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008391  Bamb_4419  short-chain dehydrogenase/reductase SDR  100 
 
 
249 aa  497  1e-140  Burkholderia ambifaria AMMD  Bacteria  normal  0.912648  hitchhiker  0.00281141 
 
 
-
 
NC_007511  Bcep18194_B0662  Short-chain dehydrogenase/reductase SDR  95.34 
 
 
249 aa  433  1e-120  Burkholderia sp. 383  Bacteria  normal  0.493963  normal  0.469625 
 
 
-
 
NC_010552  BamMC406_4937  short-chain dehydrogenase/reductase SDR  97.88 
 
 
249 aa  421  1e-117  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5281  short-chain dehydrogenase/reductase SDR  87.71 
 
 
249 aa  397  9.999999999999999e-111  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.564594  normal 
 
 
-
 
NC_008061  Bcen_3361  short-chain dehydrogenase/reductase SDR  86.44 
 
 
249 aa  391  1e-108  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5006  short-chain dehydrogenase/reductase SDR  86.44 
 
 
249 aa  391  1e-108  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1384  Short-chain dehydrogenase/reductase SDR  77.54 
 
 
249 aa  374  1e-103  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.95107 
 
 
-
 
NC_010581  Bind_1830  short-chain dehydrogenase/reductase SDR  73.79 
 
 
247 aa  357  9.999999999999999e-98  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.12368  normal 
 
 
-
 
NC_010676  Bphyt_6332  short-chain dehydrogenase/reductase SDR  77.82 
 
 
249 aa  351  7e-96  Burkholderia phytofirmans PsJN  Bacteria  normal  0.526934  normal 
 
 
-
 
NC_011071  Smal_1039  short-chain dehydrogenase/reductase SDR  65.56 
 
 
242 aa  320  9.999999999999999e-87  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.967418  normal 
 
 
-
 
NC_011368  Rleg2_4800  short-chain dehydrogenase/reductase SDR  65.18 
 
 
249 aa  317  9e-86  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.748494  normal  0.932613 
 
 
-
 
NC_011365  Gdia_2812  short-chain dehydrogenase/reductase SDR  62.1 
 
 
249 aa  311  6.999999999999999e-84  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.184253  normal 
 
 
-
 
NC_007952  Bxe_B0401  putative short-chain dehydrogenase, oxidoreductase  67.67 
 
 
259 aa  309  2.9999999999999997e-83  Burkholderia xenovorans LB400  Bacteria  normal  0.0616963  normal 
 
 
-
 
NC_010338  Caul_1396  short-chain dehydrogenase/reductase SDR  65.31 
 
 
247 aa  291  6e-78  Caulobacter sp. K31  Bacteria  normal  0.880623  normal 
 
 
-
 
NC_010505  Mrad2831_2109  short-chain dehydrogenase/reductase SDR  66.12 
 
 
248 aa  286  2.9999999999999996e-76  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_28960  Short-chain dehydrogenase/reductase, SDR family  57.2 
 
 
244 aa  275  6e-73  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0869  short-chain dehydrogenase/reductase SDR  61.63 
 
 
247 aa  249  3e-65  Conexibacter woesei DSM 14684  Bacteria  normal  0.505512  normal  0.660944 
 
 
-
 
NC_008687  Pden_3117  short-chain dehydrogenase/reductase SDR  57.32 
 
 
256 aa  246  2e-64  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_5243  short-chain dehydrogenase/reductase SDR  54.47 
 
 
245 aa  243  1.9999999999999999e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1038  short-chain dehydrogenase/reductase SDR  58.9 
 
 
247 aa  242  3e-63  Mycobacterium sp. MCS  Bacteria  hitchhiker  0.00179214  n/a   
 
 
-
 
NC_008705  Mkms_1054  short-chain dehydrogenase/reductase SDR  58.9 
 
 
289 aa  242  3.9999999999999997e-63  Mycobacterium sp. KMS  Bacteria  normal  normal  0.137743 
 
 
-
 
NC_009077  Mjls_1064  short-chain dehydrogenase/reductase SDR  58.9 
 
 
247 aa  242  5e-63  Mycobacterium sp. JLS  Bacteria  normal  0.104553  normal  0.448539 
 
 
-
 
NC_008726  Mvan_1012  short-chain dehydrogenase/reductase SDR  59.83 
 
 
245 aa  218  1e-55  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.131331 
 
 
-
 
NC_009511  Swit_1374  short-chain dehydrogenase/reductase SDR  51.43 
 
 
276 aa  212  4.9999999999999996e-54  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.155315 
 
 
-
 
NC_013730  Slin_0086  short-chain dehydrogenase/reductase SDR  38.96 
 
 
272 aa  156  3e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0479  short-chain dehydrogenase/reductase SDR  36.11 
 
 
268 aa  155  5.0000000000000005e-37  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1309  short-chain dehydrogenase/reductase SDR  38.31 
 
 
267 aa  154  1e-36  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6701  short-chain dehydrogenase/reductase SDR  36.25 
 
 
271 aa  151  8e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0069  Short-chain dehydrogenase of various substrate specificities  37.3 
 
 
277 aa  151  8e-36  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.367303  n/a   
 
 
-
 
NC_013132  Cpin_6182  short-chain dehydrogenase/reductase SDR  35.57 
 
 
271 aa  149  5e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0362247 
 
 
-
 
NC_013132  Cpin_0604  short-chain dehydrogenase/reductase SDR  36.25 
 
 
268 aa  145  4.0000000000000006e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.710903  normal  0.301955 
 
 
-
 
NC_013132  Cpin_4702  short-chain dehydrogenase/reductase SDR  35.37 
 
 
272 aa  144  1e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.315563  normal  0.0714958 
 
 
-
 
NC_013132  Cpin_1113  short-chain dehydrogenase/reductase SDR  34.69 
 
 
268 aa  144  2e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.122827 
 
 
-
 
NC_013730  Slin_3645  short-chain dehydrogenase/reductase SDR  35.6 
 
 
268 aa  141  8e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_2629  short-chain dehydrogenase/reductase SDR  36.99 
 
 
317 aa  141  9.999999999999999e-33  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013132  Cpin_2654  short-chain dehydrogenase/reductase SDR  36.54 
 
 
265 aa  139  3.9999999999999997e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4320  short-chain dehydrogenase/reductase SDR  34.54 
 
 
266 aa  137  2e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.146439  normal  0.0308076 
 
 
-
 
NC_013730  Slin_2235  short-chain dehydrogenase/reductase SDR  43.68 
 
 
266 aa  135  5e-31  Spirosoma linguale DSM 74  Bacteria  normal  0.30257  normal  0.665507 
 
 
-
 
NC_013132  Cpin_4835  short-chain dehydrogenase/reductase SDR  33.2 
 
 
273 aa  134  1.9999999999999998e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000000227026 
 
 
-
 
NC_013744  Htur_3849  short-chain dehydrogenase/reductase SDR  39.92 
 
 
314 aa  131  7.999999999999999e-30  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0687851  n/a   
 
 
-
 
NC_014230  CA2559_10768  putative oxidoreductase  40.12 
 
 
304 aa  130  1.0000000000000001e-29  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.465871  n/a   
 
 
-
 
NC_007952  Bxe_B0206  short chain dehydrogenase  43.1 
 
 
284 aa  131  1.0000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0065  Short-chain dehydrogenase of various substrate specificities  31.38 
 
 
274 aa  130  2.0000000000000002e-29  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4568  short-chain dehydrogenase/reductase SDR  34.78 
 
 
267 aa  130  3e-29  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0909607  n/a   
 
 
-
 
NC_010676  Bphyt_7087  short chain dehydrogenase  43.1 
 
 
284 aa  129  4.0000000000000003e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1073  thiamine pyrophosphate enzyme, central region  40.56 
 
 
847 aa  129  4.0000000000000003e-29  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2188  thiamine pyrophosphate protein central region  41.01 
 
 
847 aa  128  7.000000000000001e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.941679 
 
 
-
 
NC_010505  Mrad2831_5502  short-chain dehydrogenase/reductase SDR  43.68 
 
 
282 aa  128  7.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1321  short-chain dehydrogenase/reductase SDR  38.25 
 
 
282 aa  128  9.000000000000001e-29  Jannaschia sp. CCS1  Bacteria  normal  0.889604  normal 
 
 
-
 
NC_008009  Acid345_0796  short-chain dehydrogenase/reductase SDR  37.85 
 
 
281 aa  127  1.0000000000000001e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.35999 
 
 
-
 
NC_013922  Nmag_1126  short-chain dehydrogenase/reductase SDR  35.46 
 
 
338 aa  127  1.0000000000000001e-28  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1905  short chain dehydrogenase  30.12 
 
 
280 aa  126  3e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0945301  n/a   
 
 
-
 
NC_011725  BCB4264_A2787  short chain dehydrogenase  30.8 
 
 
291 aa  126  3e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2943  short-chain dehydrogenase/reductase SDR  33.6 
 
 
282 aa  126  3e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.599912  normal 
 
 
-
 
NC_008009  Acid345_2393  short chain dehydrogenase  34.25 
 
 
344 aa  126  4.0000000000000003e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.895738 
 
 
-
 
NC_011772  BCG9842_B2506  short chain dehydrogenase  30.12 
 
 
291 aa  126  4.0000000000000003e-28  Bacillus cereus G9842  Bacteria  normal  normal  0.444632 
 
 
-
 
NC_008255  CHU_3333  short chain dehydrogenase  38.06 
 
 
280 aa  126  4.0000000000000003e-28  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2547  short-chain dehydrogenase/reductase SDR  41.27 
 
 
272 aa  125  5e-28  Paracoccus denitrificans PD1222  Bacteria  normal  0.226537  normal 
 
 
-
 
NC_004578  PSPTO_4067  oxidoreductase, short-chain dehydrogenase/reductase family  40.54 
 
 
298 aa  125  7e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.122191  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2582  short chain dehydrogenase  30 
 
 
291 aa  125  7e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0166341  n/a   
 
 
-
 
NC_010623  Bphy_3982  short-chain dehydrogenase/reductase SDR  43.33 
 
 
287 aa  125  7e-28  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000201148  normal 
 
 
-
 
NC_013132  Cpin_3302  short-chain dehydrogenase/reductase SDR  34.16 
 
 
272 aa  125  8.000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000075991 
 
 
-
 
NC_013131  Caci_6366  short-chain dehydrogenase/reductase SDR  36.36 
 
 
280 aa  124  2e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.152344 
 
 
-
 
NC_013132  Cpin_3136  short-chain dehydrogenase/reductase SDR  31.47 
 
 
282 aa  123  3e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.556145  normal 
 
 
-
 
NC_011658  BCAH187_A2827  short chain dehydrogenase  28.86 
 
 
291 aa  123  3e-27  Bacillus cereus AH187  Bacteria  normal  0.199916  n/a   
 
 
-
 
NC_008254  Meso_2942  short chain dehydrogenase  35.86 
 
 
280 aa  122  7e-27  Chelativorans sp. BNC1  Bacteria  normal  0.976984  n/a   
 
 
-
 
NC_008255  CHU_3107  short-chain alcohol-related dehydrogenase  38 
 
 
272 aa  121  8e-27  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1468  short-chain dehydrogenase/reductase SDR  34.62 
 
 
277 aa  121  9e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.875416  normal 
 
 
-
 
NC_006274  BCZK2507  short chain dehydrogenase  29.6 
 
 
291 aa  121  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1925  short-chain dehydrogenase/reductase SDR  38.35 
 
 
275 aa  121  9.999999999999999e-27  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_014158  Tpau_3993  short-chain dehydrogenase/reductase SDR  39.66 
 
 
268 aa  121  9.999999999999999e-27  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.468783  n/a   
 
 
-
 
NC_010501  PputW619_0876  short chain dehydrogenase  43.75 
 
 
274 aa  120  1.9999999999999998e-26  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_2806  short chain dehydrogenase  28.92 
 
 
291 aa  120  1.9999999999999998e-26  Bacillus cereus ATCC 10987  Bacteria  normal  0.928497  n/a   
 
 
-
 
NC_006369  lpl1648  hypothetical protein  36.02 
 
 
283 aa  120  1.9999999999999998e-26  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_2783  short chain dehydrogenase  29.6 
 
 
291 aa  120  3e-26  Bacillus cereus AH820  Bacteria  n/a    normal  0.0502462 
 
 
-
 
NC_002947  PP_1274  short chain dehydrogenase  41.53 
 
 
270 aa  120  3e-26  Pseudomonas putida KT2440  Bacteria  normal  0.145274  normal 
 
 
-
 
NC_006368  lpp1655  hypothetical protein  36.02 
 
 
283 aa  120  3e-26  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007493  RSP_1694  short-chain dehydrogenase/reductase  39.2 
 
 
271 aa  119  3e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6914  short-chain dehydrogenase/reductase SDR  40.16 
 
 
279 aa  120  3e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.851419  normal 
 
 
-
 
NC_005945  BAS2590  short chain dehydrogenase  28.92 
 
 
291 aa  119  3.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1996  short-chain dehydrogenase/reductase SDR  42.94 
 
 
279 aa  119  3.9999999999999996e-26  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000141613  normal  0.0207226 
 
 
-
 
NC_007530  GBAA_2778  short chain dehydrogenase  28.92 
 
 
281 aa  119  3.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.143428  n/a   
 
 
-
 
NC_013037  Dfer_1020  short-chain dehydrogenase/reductase SDR  37.7 
 
 
273 aa  119  3.9999999999999996e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0196176  normal  0.613777 
 
 
-
 
NC_003296  RS03890  short chain dehydrogenase  39.25 
 
 
276 aa  119  4.9999999999999996e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.606349 
 
 
-
 
NC_011365  Gdia_2810  short-chain dehydrogenase/reductase SDR  41.38 
 
 
284 aa  119  4.9999999999999996e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.329601  normal 
 
 
-
 
NC_003910  CPS_4153  short chain dehydrogenase/reductase family oxidoreductase  32.27 
 
 
273 aa  119  7e-26  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4574  short chain dehydrogenase  41.53 
 
 
270 aa  118  7e-26  Pseudomonas putida GB-1  Bacteria  normal  normal  0.582259 
 
 
-
 
NC_009512  Pput_4451  short chain dehydrogenase  40.98 
 
 
270 aa  118  7.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  0.358799  normal 
 
 
-
 
NC_013132  Cpin_2239  short-chain dehydrogenase/reductase SDR  33.07 
 
 
280 aa  118  7.999999999999999e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_2541  short chain dehydrogenase  28.92 
 
 
291 aa  118  9e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000142979  n/a   
 
 
-
 
NC_012917  PC1_2479  short chain dehydrogenase  36.45 
 
 
279 aa  118  9e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6416  short-chain dehydrogenase/reductase SDR  35.44 
 
 
307 aa  118  9e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1946  short-chain dehydrogenase/reductase SDR  43.58 
 
 
299 aa  117  9.999999999999999e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1223  oxidoreductase, short chain dehydrogenase/reductase family  36.6 
 
 
272 aa  118  9.999999999999999e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1001  short-chain dehydrogenase/reductase SDR  39.66 
 
 
285 aa  118  9.999999999999999e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5146  short-chain dehydrogenase/reductase SDR  37.7 
 
 
285 aa  118  9.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00800542  normal  0.26199 
 
 
-
 
NC_009428  Rsph17025_2553  short-chain dehydrogenase/reductase SDR  38.07 
 
 
271 aa  117  9.999999999999999e-26  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.566355  normal 
 
 
-
 
NC_007951  Bxe_A2202  short chain dehydrogenase  41.01 
 
 
276 aa  117  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.516821  decreased coverage  0.00204142 
 
 
-
 
NC_008048  Sala_0078  short-chain dehydrogenase/reductase SDR  36.69 
 
 
283 aa  117  1.9999999999999998e-25  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.406068  normal 
 
 
-
 
NC_008544  Bcen2424_5911  short-chain dehydrogenase/reductase SDR  35.86 
 
 
307 aa  117  1.9999999999999998e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
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