Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4067 |
Symbol | |
ID | 1185747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4573831 |
End bp | 4574727 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637395414 |
Product | oxidoreductase, short-chain dehydrogenase/reductase family |
Protein accession | NP_793829 |
Protein GI | 28871210 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.122191 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATTGTC TGAGGTGCAG AGTTACCCAA GCACTTTCGA GAACAAGACA GGTTTGCGCC TTTCCTTCCA CTCATGGTAG TCGTATGAAA AAGACAGTTT TAATTACAGG TGCTTCATCG GGCTTCGGGT TGCTGCTTGC TACTCATCTG CATCAACAAG GCTTCAACGT CGTGGGCACG AGTCGTTATC CTGAAAAATA CGCGGGCAGC GTTCGGTTCA AACTACTGCG CCTGGACATC GATGACGATA GCTCTGTCCA GGCGTTCACT GACGAGCTTT TTAAACATAT CACCCGATTG GACGTATTGG TCAATAACGC GGGCTATATG GTCACCGGCC TTGCCGAAGA GACACCGATA GAAACAGGTC GTCAGCAGTT CGAGACAAAT TTCTGGGGCA CGGTCAAAGT GACGAACGCC CTCTTGCCTT ACATGCGTCG GCAGAAAAAT GGGCAAATTA TTACCGTCAG CTCGATGGTC GGGTTGATAG GGCCACCTAA TCTGTCTTAC TACGCGGCCT CCAAACACGC TGTGGAAGGC TACTTCAAGT CTTTGCGCTT TGAATTGAAT CAATTCAATA TCAATGTCAG CGTGATCGAA CCCGGGTGGT TCAACACTAA TTTGGGGAGC AATGCCCACT CGGCGACGGG CGGCAAGATC GCCGACTACG ATCTTTACCG TAAAAAAGTA GACCTGGTCA CCCAGAAGGG TATCGACGAG GCAGAATCAC CAAAAGCCGT TGTGAACGCA ATCGTCAACG TGATCGCTAC AAAAAAACCA CCGTTTAGCC ATCCTGTTGC AAAAATGGCC GGAATGATCT TGTTCCTTCA GCACTATCTG CCGAGCGTTT TCGAGAACGC CATATTCAAA AGCATTGCCT CGGGCAAAAA GCTTTAA
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Protein sequence | MHCLRCRVTQ ALSRTRQVCA FPSTHGSRMK KTVLITGASS GFGLLLATHL HQQGFNVVGT SRYPEKYAGS VRFKLLRLDI DDDSSVQAFT DELFKHITRL DVLVNNAGYM VTGLAEETPI ETGRQQFETN FWGTVKVTNA LLPYMRRQKN GQIITVSSMV GLIGPPNLSY YAASKHAVEG YFKSLRFELN QFNINVSVIE PGWFNTNLGS NAHSATGGKI ADYDLYRKKV DLVTQKGIDE AESPKAVVNA IVNVIATKKP PFSHPVAKMA GMILFLQHYL PSVFENAIFK SIASGKKL
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