| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3107 |
|---|
| Symbol | vdlC |
|---|
| ID | 4186557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 3548914 |
|---|
| End bp | 3549732 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638073095 |
|---|
| Product | short-chain alcohol-related dehydrogenase |
|---|
| Protein accession | YP_679689 |
|---|
| Protein GI | 110639480 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGG TTGTATTGGT AACGGGCGGC AGCTCAGGCA TCGGCAAATC CATTTGTCTG
TACCTGCATG AAAAAGGCTA CATCGTTTAT GGCACAAGCC GTAACCCGGC ACGTTACGCA
CATGAAGTAC CGTTTAAATT AATTGCGCTT GATGTATTGG ACGACACAAC CATCACCCCT
GCGCTGAAAA CAATTATAGA TGCGGAAGGT AAGCTGGACG TATTAGTCAA CAATGCCGGT
ATCGGCATGC TGGGTTCTAT TGAAGACAGC ACGGCCGAGG AAGTGAAAGA AGTATTTGAG
ACCAATGTAT ATGGTATTTT GCGTACCTGC CAGGCGGTAT TGCCGCATAT GCGTGAACGT
AAGATGGGCC TTATCATTAA TGTCAGTTCT ATTGCCGGTT ATATGGGTTT GCCATACCGG
GGTATTTACA GTGCAACAAA AGCCTCGGTA CATATGATCA CCGAAGCCAT GCGTATGGAG
CTGAAACCTT ATGGCGTGCA CGCATGTGTG GTAGATCCGG GAGATTTTGC GACCAATATC
AGCGATAACC GCAAAGTGGC TCATGCAGGA CGATCCGGTT CGGTTTATAT GGAAGAAATA
AACCGTATTG AAGCCATGAT CAACGCAGAG GTTGCTCATT CTTCCGACCC GTTGTTAATG
GGTAAAGCCA TTGAAAAGAT CATCCGAAGC TCCAATCCGG ATATTAATTA CCTGGTAGGA
AAACCAATGC AGAAATTATC CATTCTGGTA AGAAGACTTG TACCTAAAAA ATGGTTTGAA
AAGATCATTG CTTCCCATTA CAACATGCCC GTTAAGTAG
|
|---|
| Protein sequence | MNQVVLVTGG SSGIGKSICL YLHEKGYIVY GTSRNPARYA HEVPFKLIAL DVLDDTTITP
ALKTIIDAEG KLDVLVNNAG IGMLGSIEDS TAEEVKEVFE TNVYGILRTC QAVLPHMRER
KMGLIINVSS IAGYMGLPYR GIYSATKASV HMITEAMRME LKPYGVHACV VDPGDFATNI
SDNRKVAHAG RSGSVYMEEI NRIEAMINAE VAHSSDPLLM GKAIEKIIRS SNPDINYLVG
KPMQKLSILV RRLVPKKWFE KIIASHYNMP VK
|
|---|
| |