Gene Caci_5146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5146 
Symbol 
ID8336500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5911860 
End bp5912717 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content72% 
IMG OID644958244 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003115846 
Protein GI256394282 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00800542 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.26199 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCA AAACCTGGCT GATCACCGGC GCCTCCAGCG GCCTGGGCAA GGCGCTCGCC 
GAACACGTTC TGGCCCGGGG CGACCAGGCG GTGGTCGTCG CCAGCTCGAC CGCCGCCACC
GCCGAGCTGG CCGCCCGCTA CCCGGAGACC GCGCTGGCCG TGCGCCTGGA CGTCACCGAC
GCCGGGCTGC GGGCGGCGGG CGTCCGGCTG GCGGAGGAAC GCTTCGGCGG CATAGACATC
CTGGTGAACA ACGCCGCGAT CGACTTCGTC GGCGCCCTGG AGGAGCAGCG GGAGGCCGAC
TACCGCCGGC TGTTCGAGGT CAACTTCTTC GGCGCCGTCG AGCTGACCCG CGCCGTGCTC
CCCGGCATGC GCCGCCGCGG CTCCGGCGTC ATCGTCAACG TCTCCTCGAT GGACGGCCTG
GCCAGCCTCC CGGCCAACGG CTACTACTCG GCGAGCAAGT TCGCCCTCGA AGGCTTCACC
GAGGCACTGT GGCAGGAGAT CGCACCGCTC GGTCTGCACG CGATGATCAT CCAGCCCGGC
TCCTTCCGCA CCGGCATCGA GCACCGAACC AAGGCCTCCG GCGACCCGAT CGAGGACTAC
GCCGCGACCG CCGGCGCCTT CCGCGCCATG CTGGGCAACC TGTCCCCGGA GATGTTCCCC
GGCGACCCCG ACAGAGCCGC CGAGGTCATC TACGCGGAGG CGACGGCGCC CCAACCCCGC
CACTGGGTCG TCCTGGGCAG CGACGCGCAG CGCCGCATCG GCGTCAAGCT CGACCAGCTC
CGCGCCGAGT TCGACGCCGG CAAGGACGTG GCGCTGAGCA CGGACTTCCC GGGGAGCGCA
GACAACGCGG TCCTCTGA
 
Protein sequence
MNRKTWLITG ASSGLGKALA EHVLARGDQA VVVASSTAAT AELAARYPET ALAVRLDVTD 
AGLRAAGVRL AEERFGGIDI LVNNAAIDFV GALEEQREAD YRRLFEVNFF GAVELTRAVL
PGMRRRGSGV IVNVSSMDGL ASLPANGYYS ASKFALEGFT EALWQEIAPL GLHAMIIQPG
SFRTGIEHRT KASGDPIEDY AATAGAFRAM LGNLSPEMFP GDPDRAAEVI YAEATAPQPR
HWVVLGSDAQ RRIGVKLDQL RAEFDAGKDV ALSTDFPGSA DNAVL