More than 300 homologs were found in PanDaTox collection
for query gene VIBHAR_05158 on replicon NC_009784
Organism: Vibrio harveyi ATCC BAA-1116



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009784  VIBHAR_05158  transcriptional regulatory protein CpxR  100 
 
 
209 aa  427  1e-119  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_3601  response regulator receiver protein  55.72 
 
 
224 aa  222  4e-57  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0741  response regulator receiver protein  51.24 
 
 
210 aa  214  7e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.289134 
 
 
-
 
NC_008576  Mmc1_3443  response regulator receiver protein  36.45 
 
 
223 aa  137  1e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  38.19 
 
 
446 aa  98.2  7e-20  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1117  two component, sigma54 specific, Fis family transcriptional regulator  41.03 
 
 
462 aa  97.8  1e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  0.144471  normal  0.173796 
 
 
-
 
NC_007519  Dde_2355  two component Fis family transcriptional regulator  38.84 
 
 
465 aa  97.1  2e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.658958  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  41.38 
 
 
452 aa  96.3  3e-19  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008607  Ppro_3647  two component, sigma54 specific, Fis family transcriptional regulator  41.38 
 
 
451 aa  94.7  8e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  42.73 
 
 
470 aa  94.4  1e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  42.73 
 
 
473 aa  94  1e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  44.55 
 
 
451 aa  93.6  2e-18  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  42.16 
 
 
446 aa  93.6  2e-18  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2366  two component, sigma54 specific, Fis family transcriptional regulator  40.52 
 
 
385 aa  93.6  2e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000342445  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  41.58 
 
 
447 aa  93.2  3e-18  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2748  two component, sigma54 specific, transcriptional regulator, Fis family  37.7 
 
 
542 aa  92.4  4e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  41.32 
 
 
458 aa  92.8  4e-18  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  42.15 
 
 
451 aa  92.4  4e-18  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  36.54 
 
 
453 aa  92.4  4e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  42.19 
 
 
451 aa  91.7  8e-18  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  42.16 
 
 
447 aa  90.5  2e-17  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  42.16 
 
 
447 aa  90.5  2e-17  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  39.85 
 
 
446 aa  90.5  2e-17  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  42.16 
 
 
447 aa  90.5  2e-17  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  42.57 
 
 
445 aa  90.1  2e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  42.16 
 
 
447 aa  90.5  2e-17  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  43.12 
 
 
457 aa  89.4  3e-17  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  42.72 
 
 
450 aa  89.7  3e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_012918  GM21_1405  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
478 aa  89  4e-17  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000117702 
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
478 aa  89  5e-17  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_007954  Sden_1366  sigma-54 factor, interaction region  36.21 
 
 
469 aa  89  5e-17  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
457 aa  88.6  6e-17  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  41.18 
 
 
469 aa  88.2  7e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU1003  nitrogen regulation protein NR(I)  33.55 
 
 
481 aa  88.2  8e-17  Geobacter sulfurreducens PCA  Bacteria  normal  0.158383  n/a   
 
 
-
 
NC_011145  AnaeK_3251  two component, sigma54 specific, transcriptional regulator, Fis family  38.14 
 
 
465 aa  88.2  8e-17  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  40.5 
 
 
452 aa  88.2  8e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 
463 aa  88.2  8e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  40.2 
 
 
478 aa  87.8  9e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  37.17 
 
 
460 aa  87.8  1e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  42.45 
 
 
470 aa  87.4  1e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  41.18 
 
 
446 aa  87.4  1e-16  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  37.39 
 
 
461 aa  87.8  1e-16  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  40.2 
 
 
446 aa  87.4  1e-16  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_008609  Ppro_3079  two component, sigma54 specific, Fis family transcriptional regulator  36.89 
 
 
480 aa  87.8  1e-16  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00177638  n/a   
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  45.38 
 
 
471 aa  87  2e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  41.82 
 
 
463 aa  87  2e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  36.28 
 
 
457 aa  86.3  3e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1756  two component, sigma54 specific, Fis family transcriptional regulator  33.91 
 
 
450 aa  86.3  3e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  0.562134  n/a   
 
 
-
 
NC_009092  Shew_2341  two component, sigma54 specific, Fis family transcriptional regulator  30.73 
 
 
450 aa  86.7  3e-16  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
457 aa  86.7  3e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  40.5 
 
 
447 aa  86.3  3e-16  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  43.69 
 
 
446 aa  86.7  3e-16  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  43.69 
 
 
446 aa  86.7  3e-16  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  36.21 
 
 
454 aa  86.3  3e-16  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  40.2 
 
 
469 aa  86.3  3e-16  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1488  two component, sigma54 specific, Fis family transcriptional regulator  33.53 
 
 
464 aa  86.3  3e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.781886  normal  0.688737 
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  30.43 
 
 
227 aa  85.9  4e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  40.2 
 
 
446 aa  85.9  4e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  39.32 
 
 
238 aa  85.5  6e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  39.22 
 
 
479 aa  85.1  6e-16  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_002947  PP_1651  winged helix family two component transcriptional regulator  35.38 
 
 
272 aa  85.1  8e-16  Pseudomonas putida KT2440  Bacteria  normal  0.514526  normal  0.527007 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  38.79 
 
 
454 aa  84.7  8e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  34.75 
 
 
480 aa  84.7  9e-16  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  38.39 
 
 
458 aa  84.7  9e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1253  two component transcriptional regulator  35.38 
 
 
253 aa  84.7  9e-16  Pseudomonas putida GB-1  Bacteria  normal  0.85938  hitchhiker  0.000294124 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  39.47 
 
 
481 aa  84  0.000000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4066  two component transcriptional regulator  35.66 
 
 
253 aa  84.7  0.000000000000001  Pseudomonas putida F1  Bacteria  normal  normal  0.945155 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  34.19 
 
 
452 aa  84  0.000000000000001  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  38.6 
 
 
513 aa  83.6  0.000000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  35.25 
 
 
473 aa  84  0.000000000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  33.91 
 
 
450 aa  83.6  0.000000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  31.43 
 
 
151 aa  83.6  0.000000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_565  response regulator receiver:metal-dependent phosphohydrolase, HD subdomain protein  30.77 
 
 
334 aa  83.6  0.000000000000002  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  33.33 
 
 
233 aa  83.6  0.000000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_012918  GM21_0396  two component, sigma54 specific, transcriptional regulator, Fis family  40.35 
 
 
453 aa  83.6  0.000000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.262789 
 
 
-
 
NC_010501  PputW619_1213  two component transcriptional regulator  37.01 
 
 
252 aa  83.2  0.000000000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0624  response regulator  32.12 
 
 
334 aa  82.8  0.000000000000003  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  40.19 
 
 
459 aa  83.2  0.000000000000003  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  39.32 
 
 
497 aa  83.2  0.000000000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  40.5 
 
 
452 aa  82.8  0.000000000000003  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_0710  DNA-binding response regulator  38.05 
 
 
221 aa  83.2  0.000000000000003  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00420398  normal 
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  35.71 
 
 
483 aa  82.8  0.000000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_009831  Ssed_2940  two component, sigma54 specific, Fis family transcriptional regulator  37.07 
 
 
500 aa  82.4  0.000000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  34.51 
 
 
224 aa  82.8  0.000000000000004  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  44.55 
 
 
471 aa  82.8  0.000000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  37.84 
 
 
477 aa  82.4  0.000000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  39.13 
 
 
452 aa  82.4  0.000000000000004  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_007530  GBAA_3229  DNA-binding response regulator  34.51 
 
 
224 aa  82.8  0.000000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3017  two component, sigma54 specific, Fis family transcriptional regulator  35.1 
 
 
452 aa  82.4  0.000000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0144454 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  33.88 
 
 
470 aa  82.4  0.000000000000005  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_008009  Acid345_2782  two component, sigma54 specific, Fis family transcriptional regulator  34.48 
 
 
463 aa  82.4  0.000000000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.795323  normal 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  32.74 
 
 
457 aa  82.4  0.000000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  39.32 
 
 
461 aa  82  0.000000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  38.6 
 
 
456 aa  82  0.000000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  32.74 
 
 
457 aa  82  0.000000000000006  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_010506  Swoo_2797  two component, sigma54 specific, Fis family transcriptional regulator  34.29 
 
 
450 aa  82  0.000000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0916  two component, sigma-54 specific, Fis family transcriptional regulator  35.04 
 
 
480 aa  82  0.000000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.26 
 
 
451 aa  82  0.000000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3962  two-component response regulator PfeR  33.86 
 
 
240 aa  82  0.000000000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2016  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 
493 aa  82  0.000000000000006  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00000590429 
 
 
-
 
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