| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2940 |
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| Symbol | |
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| ID | 5610788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3556848 |
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| End bp | 3558350 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933880 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001474675 |
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| Protein GI | 157376075 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATTA GTCAGTCTTT TACCGCTTTA CTTGTTGAAG ACAGCATGTC ATTAGGTGCG
CTGTATACCG AGTATCTTCG CTCTGAAGGT GCTAAGGTCA CCCATGTCAA CCATGGGGAA
GATGCACTAA CCGAGTTAGC ACAATGGCAG CCCGATCTAT TAGTGTTAGA CATCAAGTTA
CCCGACATGT CGGGTATGGA AATCCTGCAA AAAGTACAAA CCAGCTATCC TGGTATTACG
GTTATCATGA TAACGGCTCA CGGAACGATA GACTTAGCGG TTGAGTCGAT GAAGTCCGGG
GCGTTCGATT TCCTGGTCAA ACCCTTCGAT GCCAAGCGAC TCTCTATTAC GGTTCGAAAT
GCGTTAAAAC AGCGCCAGCT TGTTAATCTG GTGGAAAGGT ACGAGCAAAG CCTACCCAAA
GAAAATTATA TGGGGTTTGT GGGGGAGTCA CTCGCCATGC AGACCGTATA TAAAACCATA
GACTGTGTCG CTAATAGTAA GGCATCAGTT TTCATCGTCG GGGAGAGTGG GACGGGTAAA
GAAGTTTGCG CTCATGCGAT TCATCATGCG GGGAATCGAA GCGAGAAACC TTTCGTTGCT
CTCAATTGTG CCTCTATTCC AAAAGATCTT ATCGAGAGTG AAATATTTGG CCACACTAAA
GGCGCTTTCA CGGGGGCGGT GGCAAATCGA GAGGGAGCGG CGAGTCGCGC CAACCGAGGC
ACGCTATTTC TCGATGAAAT TTGTGAGATG GACCTTGAGT TACAGAGTAA GTTACTGCGA
TTTATTCAGA CCGGCGTCTT TCAAAAGGTC GGCGGAACGA AAGAGGAGAA GGTCGACGTG
CGCTTTGTGA GCGCGACAAA CAGGATCCCT TGGGAGGAGG TTAAACAGGG ACGATTCAGA
GAAGATCTCT TCTATCGGCT TCATGTTATT CCTATCGAAC TTCCACCACT CCGAATGAGG
GGGAAAGATG TTCTGTTACT GGTAAATAAA CTACTTAAAG AGTACAACCG TGAGGAGGGG
AAGCAGTTTA AAAGTTTCAC TGCAGAGGCC AAGAAATTAC TTCAAAGCTA TGATTGGCCC
GGCAATGTAC GTCAGTTACA AAATGTGATT AGACAGGTAG TCGTGCTTAA CTCCTCCGAT
ATTGTTGAGG CGTCGATGTT ACCTGCTCTG TTTAAGTCTG AGCCGGGTAA CAGTCAGGCT
CAAATTAGGC CCGTTATCGC GATTGCGAGT GCTAATCAGC CTTCGGTACT CAATAACCAT
GAGTCACCCG CTATCGATGA GCAGGCCGGA AGCCAAAATC TGCAATCAGC GCCCTCAGAA
GCAGATAAAC CAGAGGCGAT CATTCCACTC TGGCTGTCAG AGAAACAGAC GATTGAGGCG
GCCATTGAGC AATGTGACGG TAATGTACCT AAGGCCGCGG CGCTGCTGGA TATCAGTGCC
TCGACGATTT ATCGAAAGCG TCAAGGCTGG GATGAACTAC AAGGCGCGGT TTCTGAAAAC
TAG
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| Protein sequence | MEISQSFTAL LVEDSMSLGA LYTEYLRSEG AKVTHVNHGE DALTELAQWQ PDLLVLDIKL
PDMSGMEILQ KVQTSYPGIT VIMITAHGTI DLAVESMKSG AFDFLVKPFD AKRLSITVRN
ALKQRQLVNL VERYEQSLPK ENYMGFVGES LAMQTVYKTI DCVANSKASV FIVGESGTGK
EVCAHAIHHA GNRSEKPFVA LNCASIPKDL IESEIFGHTK GAFTGAVANR EGAASRANRG
TLFLDEICEM DLELQSKLLR FIQTGVFQKV GGTKEEKVDV RFVSATNRIP WEEVKQGRFR
EDLFYRLHVI PIELPPLRMR GKDVLLLVNK LLKEYNREEG KQFKSFTAEA KKLLQSYDWP
GNVRQLQNVI RQVVVLNSSD IVEASMLPAL FKSEPGNSQA QIRPVIAIAS ANQPSVLNNH
ESPAIDEQAG SQNLQSAPSE ADKPEAIIPL WLSEKQTIEA AIEQCDGNVP KAAALLDISA
STIYRKRQGW DELQGAVSEN
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