| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1756 |
|---|
| Symbol | |
|---|
| ID | 5662151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2134969 |
|---|
| End bp | 2136321 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641236345 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_001501614 |
|---|
| Protein GI | 157961580 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.562134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG CGCCGTTACA GATCTTAGTG GTGGAAGACG AGCCCGATCA ACGAGAGTTA
ATTTGTCAAA TACTTGCCTC GAATCAATAT CAGATCACCA GCGCTGAAAG CGTTGAAGAG
GCGATTTTAT CAATAAAGTC GAGTGTACCG GATCTGGTTT TTTCTGATTG GAAGCTTGGA
CAGTTAACAG GGATGGATCT GCTGACATAC GTAAGACGAG AGCACCCCGA TATGGGATTT
ATTATCGCCA CGGCTTACGG CACTATTACC CACGCGGTGG ACGCCATGCA AGCAGGGGCA
GATGATTACC TGTCAAAACC TTATCAACGT CAGTCGTTAC TGATGGCTAT AGATAAGGTC
GCTAAATCGT TAACGTTAAA ACAGCAAAAT CGACGTCTAG CATCAGAGCT ATCTCAGCAA
CAGGAGCTCG TGGGGCTAGT GGGTAAGGCG CCGTGTATGC AGAAGGTTTA TGCTCGAGTA
CAAAGAGTGA GTGCCACCGA CGCAACGGTG CTAATTGGCG GCGAGAGTGG CACAGGTAAA
GAGCTAGCGG CTCGGGCCTT ATATCAATTA TCGAGTCGTC AACATAAGCC GTTTGTCGCT
ATCAATTGCG GCGCCATTCC CGAAACTCTT GCGGAATCAG AGCTCTTTGG CGCAGAGAAA
GGGGCATTTA CTGGTGCCAA TACGCTGAAA ATCGGTAAGC TTGAGGCGGC TAATGGCGGT
ACTATCTTTC TCGATGAAAT AGGCGAGTTA CCTCTGTTAC AGCAGACAAA GTTGCTCAGG
TTTTTACAAG AAGGCGTGAT TTCTAGGCTA GGGCAAAACG GTGAAATTAA GTTGGATGTT
AGGGTCATTG CCGCGACCCA CCGCAACCTT AAAGAGGAAG TCGAGAAGGG CAACTTTAGA
GAAGATCTAT TCTATAGGCT CAACGTGGTC CCCATCGATA TGCCACCACT GAGAGAGCGC
AAAGAAGATA TTGGCCGGCT CATAGAGCAT TTCTTAAAAA TTCATGCAGG TCAGTATGGC
GTCGAGGCAG TTAAGTTAAG TGCGGAAACC ATGAAGTCTC TGCTCGATTA TCCTTGGCCG
GGCAATGTGC GAGAACTCTC TAATCGAGTT GAACGTTTCG TATTACTGGC AGATGAGCAA
GAGCTGGTGG CCGAACTGGC GTCAGGACTG GTCGCGATTA ATCCGAGTCA GTTTGTGCTT
CCTGAGGCGG GATTTGAGTG GGAAGCGTTT GAGAAAGACT GCTTACAGCA AGCGATGTCG
CGCCATGAGG GGAATCGAAC CCAAGCGGCA AAGCAGCTAG GCTTGAGTTA TAAAGCGTTT
TTGTATCGCT TAGAGAAGTA TCAACTAGTG TAA
|
|---|
| Protein sequence | MNKAPLQILV VEDEPDQREL ICQILASNQY QITSAESVEE AILSIKSSVP DLVFSDWKLG
QLTGMDLLTY VRREHPDMGF IIATAYGTIT HAVDAMQAGA DDYLSKPYQR QSLLMAIDKV
AKSLTLKQQN RRLASELSQQ QELVGLVGKA PCMQKVYARV QRVSATDATV LIGGESGTGK
ELAARALYQL SSRQHKPFVA INCGAIPETL AESELFGAEK GAFTGANTLK IGKLEAANGG
TIFLDEIGEL PLLQQTKLLR FLQEGVISRL GQNGEIKLDV RVIAATHRNL KEEVEKGNFR
EDLFYRLNVV PIDMPPLRER KEDIGRLIEH FLKIHAGQYG VEAVKLSAET MKSLLDYPWP
GNVRELSNRV ERFVLLADEQ ELVAELASGL VAINPSQFVL PEAGFEWEAF EKDCLQQAMS
RHEGNRTQAA KQLGLSYKAF LYRLEKYQLV
|
|---|
| |