Gene Sfum_1488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1488 
Symbol 
ID4461458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1845206 
End bp1846600 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content62% 
IMG OID639702255 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_845612 
Protein GI116748925 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.781886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.688737 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAGA AAATTCTCAT TGTCGACGAC GATCCGGGCA TGCAGATCGC CCTCAACGAG 
TTTCTCAAGA AGAGGGGCTA CGAAACCGAT TCCGCCGTTT CCGCCGAGGA GGCCCTGGAC
AGGGTCAAAC ACGCCTCCTA CGACTTGATT TTTCTGGATG TGCGGCTCCC CGGCATGACG
GGAATCGATG CCATCTGCCG GATCAGGAAT TTCGACGAAC AGGGCGAGAT CATCGTCATC
ACGGCCCACG GCACCCGGGA CGTCGCCCTG GAAGCCGTCA GAAACGGGGC GTACGACTAT
TTCACCAAGC CTTTCAGCCT GCAGGAGATG GATGTCGTCA TCCGCAGAGC CCTGGAAAAA
AGAAGACTCC AGAAGGAGCT CAGCGAGCTG CGCAAGCGCA CGGGGACGAC GGAGCCCATC
GACCGGATCA TCGGGCAGAG CGAGGGCATG AAACGGGTGA AAGCGATGGT CGCCAGGATC
GCCCCGCTCG AAACCACCGT TCTCGTCACG GGAGAAAGCG GGACGGGCAA GGAACTGGTG
GCCGACATGC TCCACATGCT GAGCGCAAGG GCGAGCGCGC CCTGCATCAA GATCAACTGC
GCGTCCATCC CGGAAACACT TCTCGAGAGC GAATTGTTCG GCTACGAGCG CGGGGCGTTC
ACCGGGGCCG TCTCCTCCAG GCAGGGGAAA TTCGAGCAGG CGCACACCGG CACCATCTTC
CTCGACGAAA TCGGGGACAT GCCGTCGAGC CTCCAGGCGA AGCTGCTGCG GGTGGTGGAA
CAGAAGCAGG TGGACCGGCT CGGCGGGAAG AAGCCGGTGA AGGTGGACGT GCGGGTGGTC
GCCGCGACCA ACCGCGACCT CCTGGAGCTT GTCACCCGCA AGGAGTTCCG GGCGGACCTC
TACTACCGGT TGAACGTCGC CGCCATTCAC GTGCCGCCGC TGCGCGACCG CAAGGAGGAC
CTGCCGCTCC TGGTCGGGCA TTTCCTGAGG GAAATCAACG TGAAACTGGG CACCGACCTG
TCCGGGATTT CCAGGGAAGC CATGGAGCTG CTGTTCGGCC ACGACTGGCC CGGCAACGTG
CGGGAGCTTG CCAACCTGCT GGAGCGCGTG GCCATCGTCA ACAGGGGAAC CACGGTCTCG
CCCGAGGCGG TGACCATCGC CCTGCAGAAG CATTCCAACA CCCTGGCCGA AGAGGGGGGG
CAGGCAATGT CCCTCGGGGA TACGCTCGAT GAGCTGGAGC GGAATCTCAT TCTCGACGCC
CTGCGCAAAT GCGGCGGAGT GCAGACCAGG GCGGCGGAAA TGCTGGGCCT CAGCGCCAAG
AATTTCTGGA AGAAGATGAA AAAGCACGGC ATACGGTATG ACGGTGAACG ACATACCGAG
GAATTCTCTC AATGA
 
Protein sequence
MAEKILIVDD DPGMQIALNE FLKKRGYETD SAVSAEEALD RVKHASYDLI FLDVRLPGMT 
GIDAICRIRN FDEQGEIIVI TAHGTRDVAL EAVRNGAYDY FTKPFSLQEM DVVIRRALEK
RRLQKELSEL RKRTGTTEPI DRIIGQSEGM KRVKAMVARI APLETTVLVT GESGTGKELV
ADMLHMLSAR ASAPCIKINC ASIPETLLES ELFGYERGAF TGAVSSRQGK FEQAHTGTIF
LDEIGDMPSS LQAKLLRVVE QKQVDRLGGK KPVKVDVRVV AATNRDLLEL VTRKEFRADL
YYRLNVAAIH VPPLRDRKED LPLLVGHFLR EINVKLGTDL SGISREAMEL LFGHDWPGNV
RELANLLERV AIVNRGTTVS PEAVTIALQK HSNTLAEEGG QAMSLGDTLD ELERNLILDA
LRKCGGVQTR AAEMLGLSAK NFWKKMKKHG IRYDGERHTE EFSQ