60 homologs were found in PanDaTox collection
for query gene Smed_1767 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009636  Smed_1767  substrate-binding region of ABC-type glycine betaine transport system  100 
 
 		 332 aa  684    Sinorhizobium medicae WSM419  Bacteria  normal  0.473646  normal  0.0264882 
 
 
-
 
NC_011989  Avi_2573  ABC transporter substrate binding protein  66.87 
 
 		 332 aa  486  1e-136  Agrobacterium vitis S4  Bacteria  normal  0.0219871  n/a   
 
 
-
 
NC_012850  Rleg_2382  Substrate-binding region of ABC-type glycine betaine transport system  62.95 
 
 		 331 aa  452  1.0000000000000001e-126  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0539771  hitchhiker  0.00933627 
 
 
-
 
NC_009050  Rsph17029_3787  substrate-binding region of ABC-type glycine betaine transport system  61.76 
 
 		 333 aa  439  9.999999999999999e-123  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.347149 
 
 
-
 
NC_009428  Rsph17025_2828  substrate-binding region of ABC-type glycine betaine transport system  65.32 
 
 		 333 aa  440  9.999999999999999e-123  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.23634 
 
 
-
 
NC_011369  Rleg2_2138  Substrate-binding region of ABC-type glycine betaine transport system  61.75 
 
 		 331 aa  440  9.999999999999999e-123  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0458223  normal  0.188194 
 
 
-
 
NC_007494  RSP_3059  ABC proline/glycine betaine transporter, periplasmic substrate-binding protein  64.31 
 
 		 333 aa  436  1e-121  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.78778  n/a   
 
 
-
 
NC_009636  Smed_0650  substrate-binding region of ABC-type glycine betaine transport system  55.42 
 
 		 332 aa  389  1e-107  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.324621 
 
 
-
 
NC_008687  Pden_3856  substrate-binding region of ABC-type glycine betaine transport system  55.72 
 
 		 331 aa  388  1e-107  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.215076 
 
 
-
 
NC_011368  Rleg2_4910  Substrate-binding region of ABC-type glycine betaine transport system  53.45 
 
 		 333 aa  375  1e-103  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012848  Rleg_4822  Substrate-binding region of ABC-type glycine betaine transport system  53.15 
 
 		 333 aa  376  1e-103  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4889  substrate-binding region of ABC-type glycine betaine transport system  51.64 
 
 		 333 aa  363  2e-99  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.64177 
 
 
-
 
NC_008686  Pden_1195  substrate-binding region of ABC-type glycine betaine transport system  50.16 
 
 		 333 aa  338  5.9999999999999996e-92  Paracoccus denitrificans PD1222  Bacteria  normal  0.353421  normal  1 
 
 
-
 
NC_008686  Pden_0945  substrate-binding region of ABC-type glycine betaine transport system  50.16 
 
 		 333 aa  338  5.9999999999999996e-92  Paracoccus denitrificans PD1222  Bacteria  normal  0.249192  normal  1 
 
 
-
 
NC_010506  Swoo_1845  substrate-binding region of ABC-type glycine betaine transport system  47.56 
 
 		 334 aa  338  9.999999999999999e-92  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000186809  normal  0.0102549 
 
 
-
 
NC_009784  VIBHAR_06562  hypothetical protein  49.2 
 
 		 330 aa  338  9.999999999999999e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_2919  Substrate-binding region of ABC-type glycine betaine transport system  50.45 
 
 		 333 aa  337  1.9999999999999998e-91  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0603439  normal  1 
 
 
-
 
NC_009901  Spea_0257  substrate-binding region of ABC-type glycine betaine transport system  49.51 
 
 		 334 aa  334  1e-90  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_4235  ABC transporter substrate-binding protein  46.08 
 
 		 334 aa  319  3e-86  Shewanella sediminis HAW-EB3  Bacteria  normal  0.663539  hitchhiker  0.000000168008 
 
 
-
 
NC_013457  VEA_001569  putative periplasmic substrate-binding protein  42.31 
 
 		 331 aa  300  2e-80  Vibrio sp. Ex25  Bacteria  normal  0.496991  n/a   
 
 
-
 
NC_003910  CPS_4933  amino acid ABC transporter, periplasmic amino acid-binding protein  34.64 
 
 		 323 aa  239  2.9999999999999997e-62  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1285  Substrate-binding region of ABC-type glycine betaine transport system  31.25 
 
 		 334 aa  174  1.9999999999999998e-42  Meiothermus ruber DSM 1279  Bacteria  normal  0.435568  normal  0.230718 
 
 
-
 
NC_007969  Pcryo_1086  substrate-binding region of ABC-type glycine betaine transport system  31.15 
 
 		 646 aa  165  1.0000000000000001e-39  Psychrobacter cryohalolentis K5  Bacteria  normal  0.809733  normal  0.592465 
 
 
-
 
NC_009524  PsycPRwf_1376  substrate-binding region of ABC-type glycine betaine transport system  31.68 
 
 		 652 aa  158  1e-37  Psychrobacter sp. PRwf-1  Bacteria  normal  1  hitchhiker  0.000369923 
 
 
-
 
NC_009719  Plav_1066  substrate-binding region of ABC-type glycine betaine transport system  29.01 
 
 		 633 aa  149  5e-35  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_67400  putative ABC transporter, periplasmic substrate-binding protein  28.61 
 
 		 340 aa  146  6e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_2543  substrate-binding region of ABC-type glycine betaine transport system  31.01 
 
 		 342 aa  144  2e-33  Chelativorans sp. BNC1  Bacteria  normal  0.221502  n/a   
 
 
-
 
NC_009656  PSPA7_5836  hypothetical protein  28.03 
 
 		 356 aa  143  4e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_2583  substrate-binding region of ABC-type glycine betaine transport system  29.63 
 
 		 344 aa  130  4.0000000000000003e-29  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.201596 
 
 
-
 
NC_010718  Nther_2048  Substrate-binding region of ABC-type glycine betaine transport system  27 
 
 		 341 aa  129  8.000000000000001e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0715987  decreased coverage  0.00000000000901879 
 
 
-
 
NC_009512  Pput_2216  substrate-binding region of ABC-type glycine betaine transport system  27.19 
 
 		 338 aa  129  1.0000000000000001e-28  Pseudomonas putida F1  Bacteria  normal  0.228946  normal  1 
 
 
-
 
NC_002947  PP_3558  substrate-binding region of ABC-type glycine betaine transport system  26.67 
 
 		 338 aa  126  5e-28  Pseudomonas putida KT2440  Bacteria  normal  0.561868  normal  1 
 
 
-
 
NC_007492  Pfl01_3319  substrate-binding region of ABC-type glycine betaine transport system  27.03 
 
 		 337 aa  125  9e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_4829  substrate-binding region of ABC-type glycine betaine transport system  26.15 
 
 		 322 aa  124  3e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.93299 
 
 
-
 
NC_007005  Psyr_3778  substrate-binding region of ABC-type glycine betaine transport system  26.39 
 
 		 337 aa  124  3e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.110017 
 
 
-
 
NC_004578  PSPTO_5271  histidine transporter, periplasmic histidine-binding protein  25.86 
 
 		 322 aa  124  3e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_008346  Swol_1738  ABC transporter substrate-binding protein  26.46 
 
 		 340 aa  123  6e-27  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0735907  n/a   
 
 
-
 
NC_009832  Spro_0802  substrate-binding region of ABC-type glycine betaine transport system  25.65 
 
 		 321 aa  122  7e-27  Serratia proteamaculans 568  Bacteria  normal  0.0332812  normal  1 
 
 
-
 
NC_008463  PA14_67300  putative binding protein component of ABC transporter  25.71 
 
 		 322 aa  122  9.999999999999999e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B2845  ABC proline/glycine betaine transporter, periplasmic ligand binding protein  28.75 
 
 		 345 aa  121  1.9999999999999998e-26  Burkholderia sp. 383  Bacteria  normal  1  normal  0.894091 
 
 
-
 
NC_009656  PSPA7_5830  ABC transporter periplasmic binding protein  26.21 
 
 		 322 aa  120  3.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_4344  substrate-binding region of ABC-type glycine betaine transport system  27.33 
 
 		 337 aa  119  9.999999999999999e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_2363  substrate-binding region of ABC-type glycine betaine transport system  25.62 
 
 		 338 aa  111  2.0000000000000002e-23  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_0362  substrate-binding region of ABC-type glycine betaine transport system  24.5 
 
 		 322 aa  108  1e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.376501  normal  1 
 
 
-
 
NC_004578  PSPTO_1600  ABC transporter, periplasmic substrate-binding protein, putative  26.32 
 
 		 337 aa  105  9e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.865849  n/a   
 
 
-
 
NC_013595  Sros_1794  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  25 
 
 		 330 aa  75.1  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_1628  substrate-binding region of ABC-type glycine betaine transport system  26.28 
 
 		 324 aa  73.9  0.000000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.634582  normal  1 
 
 
-
 
NC_009380  Strop_1643  substrate-binding region of ABC-type glycine betaine transport system  26.64 
 
 		 323 aa  70.5  0.00000000004  Salinispora tropica CNB-440  Bacteria  normal  0.010471  normal  1 
 
 
-
 
NC_013947  Snas_2396  Substrate-binding region of ABC-type glycine betaine transport system  21.65 
 
 		 314 aa  68.2  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.83747  hitchhiker  0.000913379 
 
 
-
 
NC_009953  Sare_3224  substrate-binding region of ABC-type glycine betaine transport system  21.04 
 
 		 323 aa  66.2  0.0000000007  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1793  ABC-type proline/glycine betaine transport systems periplasmic components-like protein  23.64 
 
 		 308 aa  59.7  0.00000008  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_1134  glycine betaine ABC transporter substrate-binding protein  20.06 
 
 		 317 aa  57.4  0.0000004  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.71375 
 
 
-
 
NC_011370  Rleg2_6171  Substrate-binding region of ABC-type glycine betaine transport system  23.01 
 
 		 318 aa  56.6  0.0000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.367394 
 
 
-
 
NC_008392  Bamb_5760  substrate-binding region of ABC-type glycine betaine transport system  22.67 
 
 		 293 aa  50.8  0.00003  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004311  BRA0738  glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein, putative  24.66 
 
 		 288 aa  50.1  0.00006  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6868  substrate-binding region of ABC-type glycine betaine transport system  21.78 
 
 		 293 aa  48.5  0.0001  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009668  Oant_3887  substrate-binding region of ABC-type glycine betaine transport system  24.2 
 
 		 288 aa  48.9  0.0001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.326958  n/a   
 
 
-
 
NC_009952  Dshi_1438  substrate-binding region of ABC-type glycine betaine transport system  23.93 
 
 		 321 aa  44.3  0.003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0879571  normal  0.595095 
 
 
-
 
NC_008709  Ping_3427  substrate-binding region of ABC-type glycine betaine transport system  22.94 
 
 		 310 aa  44.3  0.003  Psychromonas ingrahamii 37  Bacteria  normal  1  hitchhiker  0.00319099 
 
 
-
 
NC_010718  Nther_2053  Substrate-binding region of ABC-type glycine betaine transport system  22.38 
 
 		 314 aa  42.7  0.009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.0000000000296796  hitchhiker  0.00000000325695 
 
 
-
 
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