More than 300 homologs were found in PanDaTox collection
for query gene Shew_2660 on replicon NC_009092
Organism: Shewanella loihica PV-4



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_2660  hypothetical protein  100 
 
 
410 aa  828    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1429  hypothetical protein  65.85 
 
 
411 aa  518  1e-146  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05401  hypothetical protein  58.02 
 
 
409 aa  476  1e-133  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001464  ABC-type transport system involved in lipoprotein release permease component  58.02 
 
 
409 aa  468  1.0000000000000001e-131  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3197  hypothetical protein  60.52 
 
 
427 aa  464  1e-129  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2534  protein of unknown function DUF214  36.57 
 
 
406 aa  235  1.0000000000000001e-60  Rhodothermus marinus DSM 4252  Bacteria  normal  0.261611  n/a   
 
 
-
 
NC_007520  Tcr_0434  hypothetical protein  29.22 
 
 
425 aa  164  2.0000000000000002e-39  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1663  protein of unknown function DUF214  29.7 
 
 
535 aa  152  7e-36  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5303  protein of unknown function DUF214  29.7 
 
 
830 aa  152  1e-35  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2374  ABC-type transport system, permease component  30.09 
 
 
409 aa  149  8e-35  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000200206  n/a   
 
 
-
 
NC_008554  Sfum_2498  hypothetical protein  28.69 
 
 
380 aa  148  2.0000000000000003e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00553555  normal 
 
 
-
 
NC_003910  CPS_5042  ABC transporter, permease protein, putative  30.26 
 
 
415 aa  145  1e-33  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2373  ABC-type transport system, permease component  30.03 
 
 
407 aa  137  3.0000000000000003e-31  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000351897  n/a   
 
 
-
 
NC_013946  Mrub_2903  hypothetical protein  31.71 
 
 
410 aa  130  3e-29  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.110934 
 
 
-
 
NC_013946  Mrub_2901  hypothetical protein  30.56 
 
 
411 aa  125  1e-27  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0934048 
 
 
-
 
NC_009784  VIBHAR_05402  hypothetical protein  27.32 
 
 
411 aa  124  3e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_2535  protein of unknown function DUF214  28.88 
 
 
412 aa  123  6e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3196  hypothetical protein  26.24 
 
 
410 aa  122  8e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2659  hypothetical protein  26.9 
 
 
421 aa  122  1.9999999999999998e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001465  ABC-type transport system involved in lipoprotein release permease component  26.35 
 
 
411 aa  121  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0435  hypothetical protein  27.46 
 
 
431 aa  117  3e-25  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.131989  n/a   
 
 
-
 
NC_003910  CPS_5041  putative ABC transporter, permease protein  24.7 
 
 
441 aa  116  8.999999999999998e-25  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1430  hypothetical protein  26.11 
 
 
428 aa  110  4.0000000000000004e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2497  hypothetical protein  27.37 
 
 
422 aa  104  2e-21  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.536779  normal 
 
 
-
 
NC_010682  Rpic_1691  protein of unknown function DUF214  27.97 
 
 
295 aa  104  2e-21  Ralstonia pickettii 12J  Bacteria  normal  0.132145  normal 
 
 
-
 
NC_009511  Swit_2346  LolC/E family lipoprotein releasing system, transmembrane protein  27.46 
 
 
416 aa  103  4e-21  Sphingomonas wittichii RW1  Bacteria  normal  0.323587  normal 
 
 
-
 
NC_011899  Hore_23230  ABC-type transport system, involved in lipoprotein release, permease component  25.73 
 
 
419 aa  103  5e-21  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000130781  n/a   
 
 
-
 
NC_011899  Hore_23260  ABC-type transport system, involved in lipoprotein release, permease component  23.68 
 
 
419 aa  103  7e-21  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1765  LolC/E family lipoprotein releasing system, transmembrane protein  27.36 
 
 
413 aa  101  2e-20  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.157209  n/a   
 
 
-
 
NC_011004  Rpal_3275  lipoprotein releasing system, transmembrane protein, LolC/E family  24.15 
 
 
422 aa  95.5  1e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.314483  n/a   
 
 
-
 
NC_007520  Tcr_1172  LolC/E family lipoprotein releasing system, transmembrane protein  24.81 
 
 
416 aa  95.5  2e-18  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0830739  n/a   
 
 
-
 
NC_007778  RPB_2598  LolC/E family lipoprotein releasing system, transmembrane protein  25 
 
 
426 aa  95.5  2e-18  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.258492  normal  0.437082 
 
 
-
 
NC_007958  RPD_2864  LolC/E family lipoprotein releasing system, transmembrane protein  24.15 
 
 
422 aa  95.1  2e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.998701  normal  0.300269 
 
 
-
 
NC_011894  Mnod_4145  lipoprotein releasing system, transmembrane protein, LolC/E family  27.27 
 
 
428 aa  94.4  3e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2196  LolC/E family lipoprotein releasing system, transmembrane protein  23.31 
 
 
426 aa  94.4  3e-18  Nitrobacter hamburgensis X14  Bacteria  decreased coverage  0.00714902  n/a   
 
 
-
 
NC_007643  Rru_A1578  LolC/E family lipoprotein releasing system, transmembrane protein  23.67 
 
 
417 aa  92.8  9e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0665062  n/a   
 
 
-
 
NC_011369  Rleg2_1280  lipoprotein releasing system, transmembrane protein, LolC/E family  24.09 
 
 
434 aa  92  2e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0107812  normal  0.317103 
 
 
-
 
NC_007406  Nwi_1864  LolC/E family lipoprotein releasing system, transmembrane protein  24.07 
 
 
426 aa  91.3  3e-17  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.172929  normal  0.0361846 
 
 
-
 
NC_008048  Sala_1175  LolC/E family lipoprotein releasing system, transmembrane protein  23.77 
 
 
416 aa  91.3  3e-17  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.433535  normal 
 
 
-
 
NC_009784  VIBHAR_07028  efflux ABC transporter ATP-binding/permease  27.33 
 
 
422 aa  91.3  3e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_4409  LolC/E family lipoprotein releasing system, transmembrane protein  26.75 
 
 
433 aa  90.9  4e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.452061 
 
 
-
 
NC_013457  VEA_000978  ABC-type transport system involved in lipoprotein release permease component  28.12 
 
 
422 aa  90.5  4e-17  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7413  ABC efflux pump, inner membrane subunit  26.93 
 
 
405 aa  90.5  5e-17  Burkholderia sp. 383  Bacteria  normal  0.155043  normal 
 
 
-
 
NC_013422  Hneap_0224  lipoprotein releasing system, transmembrane protein, LolC/E family  23.03 
 
 
415 aa  90.5  5e-17  Halothiobacillus neapolitanus c2  Bacteria  normal  0.0374875  n/a   
 
 
-
 
NC_011899  Hore_23240  ABC-type transport system, involved in lipoprotein release, permease component  22.01 
 
 
415 aa  90.1  6e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1809  lipoprotein releasing system transmembrane protein LolE  23.12 
 
 
414 aa  90.1  7e-17  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1372  lipoprotein releasing system, transmembrane protein, LolC/E family  24.09 
 
 
434 aa  89.7  9e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1621  protein of unknown function DUF214  26.29 
 
 
404 aa  89.4  1e-16  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_3204  LolC/E family lipoprotein releasing system, transmembrane protein  25.07 
 
 
427 aa  89  2e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.22882  normal 
 
 
-
 
NC_008553  Mthe_0918  hypothetical protein  23.1 
 
 
389 aa  88.2  2e-16  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_008609  Ppro_3015  LolC/E family lipoprotein releasing system, transmembrane protein  23.48 
 
 
420 aa  87.8  3e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4530  LolC/E family lipoprotein releasing system, transmembrane protein  23.35 
 
 
426 aa  87.8  3e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_007963  Csal_1582  LolC/E family lipoprotein releasing system, transmembrane protein  27.27 
 
 
413 aa  87.8  4e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.346322  n/a   
 
 
-
 
NC_011989  Avi_1740  ABC transporter membrane spanning protein  25.21 
 
 
435 aa  87  5e-16  Agrobacterium vitis S4  Bacteria  normal  0.147499  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1577  protein of unknown function DUF214  26.14 
 
 
401 aa  87  6e-16  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.340093  n/a   
 
 
-
 
NC_010814  Glov_0758  lipoprotein releasing system, transmembrane protein, LolC/E family  22.86 
 
 
420 aa  86.7  6e-16  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00020569  n/a   
 
 
-
 
NC_009727  CBUD_1046  lipoprotein releasing system transmembrane protein  26.55 
 
 
414 aa  85.5  0.000000000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0938  LolC/E family lipoprotein releasing system, transmembrane protein  26.55 
 
 
414 aa  85.5  0.000000000000001  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2428  LolC/E family lipoprotein releasing system, transmembrane protein  22.52 
 
 
426 aa  85.9  0.000000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.507047  normal  0.0670699 
 
 
-
 
NC_013889  TK90_1199  lipoprotein releasing system, transmembrane protein, LolC/E family  23.65 
 
 
416 aa  85.9  0.000000000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.132324 
 
 
-
 
NC_011899  Hore_19660  ABC-type transport system, involved in lipoprotein release, permease component  25.12 
 
 
400 aa  85.1  0.000000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0700  lipoprotein releasing system, transmembrane protein, LolC/E family  26.1 
 
 
423 aa  85.1  0.000000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_1195  lipoprotein releasing system, transmembrane protein, LolC/E family  24.17 
 
 
439 aa  85.5  0.000000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1065  LolC/E family lipoprotein releasing system, transmembrane protein  25.08 
 
 
439 aa  85.1  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.123078 
 
 
-
 
NC_008752  Aave_3700  LolC/E family lipoprotein releasing system, transmembrane protein  23.29 
 
 
417 aa  84.7  0.000000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.8164 
 
 
-
 
NC_009456  VC0395_0383  hypothetical protein  28.33 
 
 
419 aa  84.3  0.000000000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1000  lipoprotein releasing system, transmembrane protein, LolC/E family  23.88 
 
 
439 aa  84.3  0.000000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal  0.14096 
 
 
-
 
NC_007947  Mfla_2095  LolC/E family lipoprotein releasing system, transmembrane protein  24.5 
 
 
421 aa  83.6  0.000000000000007  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00459774  normal 
 
 
-
 
NC_004310  BR0823  ABC transporter, permease protein  24.2 
 
 
422 aa  82.8  0.000000000000009  Brucella suis 1330  Bacteria  normal  0.395922  n/a   
 
 
-
 
NC_007484  Noc_2669  LolC/E family lipoprotein releasing system, transmembrane protein  26.53 
 
 
415 aa  83.2  0.000000000000009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1366  LolC/E family lipoprotein releasing system, transmembrane protein  24.63 
 
 
408 aa  82.8  0.000000000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.217764  n/a   
 
 
-
 
NC_007298  Daro_2394  hypothetical protein  25.23 
 
 
406 aa  82.8  0.00000000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.48898  normal  0.587335 
 
 
-
 
NC_007798  NSE_0137  putative permease  24.19 
 
 
407 aa  82.4  0.00000000000001  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0613  lipoprotein releasing system, transmembrane protein, LolC/E family  22.61 
 
 
411 aa  82.8  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  unclonable  0.00000287642  n/a   
 
 
-
 
NC_008639  Cpha266_1098  hypothetical protein  26.54 
 
 
429 aa  82.4  0.00000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.0142755  n/a   
 
 
-
 
NC_010002  Daci_5401  LolC/E family lipoprotein releasing system, transmembrane protein  25.63 
 
 
423 aa  82  0.00000000000002  Delftia acidovorans SPH-1  Bacteria  normal  0.117898  normal 
 
 
-
 
NC_010581  Bind_1796  LolC/E family lipoprotein releasing system, transmembrane protein  23.71 
 
 
439 aa  82  0.00000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.401704  normal 
 
 
-
 
NC_009675  Anae109_1118  hypothetical protein  27.86 
 
 
661 aa  81.3  0.00000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0279794 
 
 
-
 
NC_009505  BOV_0817  ABC transporter, permease protein  23.91 
 
 
413 aa  80.9  0.00000000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3344  lipoprotein releasing system, transmembrane protein, LolC/E family  23.6 
 
 
415 aa  80.9  0.00000000000004  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1634  LolC/E family lipoprotein releasing system, transmembrane protein  25.58 
 
 
417 aa  80.5  0.00000000000005  Shewanella loihica PV-4  Bacteria  normal  0.0870078  normal  0.876319 
 
 
-
 
NC_009484  Acry_0940  LolC/E family lipoprotein releasing system, transmembrane protein  21.21 
 
 
415 aa  80.5  0.00000000000005  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2040  LolC/E family lipoprotein releasing system, transmembrane protein  22.26 
 
 
436 aa  80.5  0.00000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.489126  normal 
 
 
-
 
NC_008554  Sfum_3743  LolC/E family lipoprotein releasing system, transmembrane protein  23.64 
 
 
410 aa  80.1  0.00000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.14534  normal 
 
 
-
 
NC_007614  Nmul_A2509  LolC/E family lipoprotein releasing system, transmembrane protein  24.33 
 
 
414 aa  79  0.0000000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.418191  n/a   
 
 
-
 
NC_008009  Acid345_3567  LolC/E family lipoprotein releasing system, transmembrane protein  22.51 
 
 
423 aa  79.3  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.756596  normal 
 
 
-
 
NC_011898  Ccel_0856  protein of unknown function DUF214  22 
 
 
417 aa  79  0.0000000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.0205588  n/a   
 
 
-
 
NC_009457  VC0395_A1472  outer membrane-specific lipoprotein transporter subunit LolE  26.56 
 
 
414 aa  78.6  0.0000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0837  lipoprotein releasing system, transmembrane protein, LolC/E family  23.11 
 
 
416 aa  78.2  0.0000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.0822431  n/a   
 
 
-
 
NC_007492  Pfl01_3859  LolC/E family lipoprotein releasing system, transmembrane protein  24.46 
 
 
416 aa  79  0.0000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4462  LolC/E family lipoprotein releasing system, transmembrane protein  23.31 
 
 
447 aa  79  0.0000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.919983  normal  0.365763 
 
 
-
 
NC_008340  Mlg_1440  LolC/E family lipoprotein releasing system, transmembrane protein  23.29 
 
 
415 aa  78.6  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.141439  normal  0.211841 
 
 
-
 
NC_008786  Veis_2542  hypothetical protein  25.37 
 
 
441 aa  78.2  0.0000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.429279  normal  0.740963 
 
 
-
 
NC_003910  CPS_3479  lipoprotein releasing system transmembrane protein LolC  25.38 
 
 
422 aa  77.8  0.0000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.640884  n/a   
 
 
-
 
NC_009524  PsycPRwf_1740  LolC/E family lipoprotein releasing system, transmembrane protein  22.83 
 
 
411 aa  77.4  0.0000000000004  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.170655 
 
 
-
 
NC_012791  Vapar_1210  lipoprotein releasing system, transmembrane protein, LolC/E family  23.86 
 
 
418 aa  77.4  0.0000000000004  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_29500  hypothetical protein  25.86 
 
 
416 aa  76.6  0.0000000000007  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2811  LolC/E family lipoprotein releasing system, transmembrane protein  24.31 
 
 
424 aa  76.6  0.0000000000007  Caulobacter sp. K31  Bacteria  normal  0.0243258  normal  0.703642 
 
 
-
 
NC_011901  Tgr7_1365  lipoprotein releasing system, transmembrane protein, LolC/E family  22.26 
 
 
415 aa  76.6  0.0000000000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_3383  lipoprotein releasing system, transmembrane protein, LolC/E family  21.64 
 
 
409 aa  76.6  0.0000000000008  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>